Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 MIR770-201ENST00000390219 98 ntBASIC12.74□□□□□ -0.37
CDX1P47902 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC12.74□□□□□ -0.37
CDX1P47902 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 KLF2P3-201ENST00000451977 1087 ntBASIC12.74□□□□□ -0.37
CDX1P47902 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC12.74□□□□□ -0.37
CDX1P47902 RARRES2P9-201ENST00000565168 469 ntBASIC12.74□□□□□ -0.37
CDX1P47902 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC12.74□□□□□ -0.37
CDX1P47902 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC12.74□□□□□ -0.37
CDX1P47902 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.74□□□□□ -0.37
CDX1P47902 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC12.74□□□□□ -0.37
CDX1P47902 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC12.74□□□□□ -0.37
CDX1P47902 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CDX1P47902 PID1-202ENST00000392054 2745 ntTSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 AP3S2-216ENST00000617003 1561 ntBASIC12.73□□□□□ -0.37
CDX1P47902 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
CDX1P47902 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC12.73□□□□□ -0.37
CDX1P47902 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC12.73□□□□□ -0.37
CDX1P47902 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
CDX1P47902 FAM220BP-201ENST00000377689 816 ntBASIC12.73□□□□□ -0.37
CDX1P47902 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 HMGN1P19-201ENST00000436976 333 ntBASIC12.73□□□□□ -0.37
CDX1P47902 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC12.73□□□□□ -0.37
CDX1P47902 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC12.73□□□□□ -0.37
CDX1P47902 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC12.73□□□□□ -0.37
CDX1P47902 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC12.73□□□□□ -0.37
CDX1P47902 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC12.73□□□□□ -0.37
CDX1P47902 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 AC018529.1-201ENST00000613063 361 ntBASIC12.73□□□□□ -0.37
CDX1P47902 MIR6080-201ENST00000617359 66 ntBASIC12.73□□□□□ -0.37
CDX1P47902 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC12.73□□□□□ -0.37
CDX1P47902 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC12.73□□□□□ -0.37
CDX1P47902 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CDX1P47902 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.73□□□□□ -0.37
CDX1P47902 AMT-204ENST00000427987 1646 ntTSL 5 BASIC12.73□□□□□ -0.37
CDX1P47902 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.73□□□□□ -0.37
CDX1P47902 AC008677.1-201ENST00000519230 1561 ntBASIC12.73□□□□□ -0.37
CDX1P47902 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDX1P47902 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CDX1P47902 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms