Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
MSX2P35548 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 KRT8P37-201ENST00000451609 1420 ntBASIC14.83□□□□□ -0.04
MSX2P35548 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 AC007326.2-201ENST00000624224 7579 ntBASIC14.83□□□□□ -0.04
MSX2P35548 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MSX2P35548 AC089987.1-201ENST00000551654 2209 ntBASIC14.82□□□□□ -0.04
MSX2P35548 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 AL607033.1-201ENST00000623900 1599 ntBASIC14.82□□□□□ -0.04
MSX2P35548 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX2P35548 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX2P35548 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.82□□□□□ -0.04
MSX2P35548 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.82□□□□□ -0.04
MSX2P35548 RPS8P6-201ENST00000426177 609 ntBASIC14.82□□□□□ -0.04
MSX2P35548 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.82□□□□□ -0.04
MSX2P35548 BMF-207ENST00000559701 630 ntTSL 3 BASIC14.82□□□□□ -0.04
MSX2P35548 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX2P35548 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.82□□□□□ -0.04
MSX2P35548 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.82□□□□□ -0.04
MSX2P35548 AC012313.10-201ENST00000623509 926 ntBASIC14.82□□□□□ -0.04
MSX2P35548 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX2P35548 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
MSX2P35548 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX2P35548 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
MSX2P35548 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 AC025580.3-201ENST00000617932 1424 ntBASIC14.82□□□□□ -0.04
MSX2P35548 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX2P35548 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX2P35548 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.81□□□□□ -0.04
MSX2P35548 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.81□□□□□ -0.04
MSX2P35548 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
MSX2P35548 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
MSX2P35548 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 UPK3BP1-201ENST00000428678 509 ntBASIC14.81□□□□□ -0.04
MSX2P35548 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.81□□□□□ -0.04
MSX2P35548 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.81□□□□□ -0.04
MSX2P35548 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC14.81□□□□□ -0.04
MSX2P35548 HNRNPUP1-201ENST00000554987 333 ntBASIC14.81□□□□□ -0.04
MSX2P35548 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.81□□□□□ -0.04
MSX2P35548 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.81□□□□□ -0.04
MSX2P35548 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.81□□□□□ -0.04
MSX2P35548 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC14.81□□□□□ -0.04
MSX2P35548 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.81□□□□□ -0.04
MSX2P35548 AL049840.3-201ENST00000602669 611 ntBASIC14.81□□□□□ -0.04
MSX2P35548 AC023141.13-201ENST00000604991 943 ntBASIC14.81□□□□□ -0.04
MSX2P35548 FAM215A-202ENST00000632077 792 ntBASIC14.81□□□□□ -0.04
MSX2P35548 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX2P35548 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
MSX2P35548 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms