Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SCN4AP35499 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.74■□□□□ 0.43
SCN4AP35499 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.74■□□□□ 0.43
SCN4AP35499 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SCN4AP35499 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.74■□□□□ 0.43
SCN4AP35499 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SCN4AP35499 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 REXO1L4P-201ENST00000605109 1937 ntBASIC17.73■□□□□ 0.43
SCN4AP35499 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.73■□□□□ 0.43
SCN4AP35499 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC17.73■□□□□ 0.43
SCN4AP35499 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC17.73■□□□□ 0.43
SCN4AP35499 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.73■□□□□ 0.43
SCN4AP35499 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC17.73■□□□□ 0.43
SCN4AP35499 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC17.73■□□□□ 0.43
SCN4AP35499 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.73■□□□□ 0.43
SCN4AP35499 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC17.73■□□□□ 0.43
SCN4AP35499 AC002472.4-201ENST00000641915 272 ntBASIC17.73■□□□□ 0.43
SCN4AP35499 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 AC080080.1-201ENST00000625121 2420 ntBASIC17.73■□□□□ 0.43
SCN4AP35499 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.73■□□□□ 0.43
SCN4AP35499 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN4AP35499 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 FAM90A21P-201ENST00000510875 1396 ntBASIC17.72■□□□□ 0.43
SCN4AP35499 FAM90A15P-201ENST00000514465 1395 ntBASIC17.72■□□□□ 0.43
SCN4AP35499 FAM90A6P-201ENST00000515148 1394 ntBASIC17.72■□□□□ 0.43
SCN4AP35499 FAM90A16P-201ENST00000526662 1395 ntBASIC17.72■□□□□ 0.43
SCN4AP35499 FAM90A9P-201ENST00000527940 1395 ntBASIC17.72■□□□□ 0.43
SCN4AP35499 FAM90A5P-201ENST00000528738 1395 ntBASIC17.72■□□□□ 0.43
SCN4AP35499 FAM90A14P-201ENST00000530386 1395 ntBASIC17.72■□□□□ 0.43
SCN4AP35499 FAM90A13P-201ENST00000534703 1395 ntBASIC17.72■□□□□ 0.43
SCN4AP35499 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 UROS-201ENST00000368774 744 ntTSL 2 BASIC17.72■□□□□ 0.43
SCN4AP35499 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC17.72■□□□□ 0.43
SCN4AP35499 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC17.72■□□□□ 0.43
SCN4AP35499 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 AC138701.2-201ENST00000553634 226 ntBASIC17.72■□□□□ 0.43
SCN4AP35499 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.72■□□□□ 0.43
SCN4AP35499 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.72■□□□□ 0.43
SCN4AP35499 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.72■□□□□ 0.43
SCN4AP35499 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
SCN4AP35499 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
SCN4AP35499 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 OR2R1P-201ENST00000441404 914 ntBASIC17.72■□□□□ 0.43
SCN4AP35499 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC17.72■□□□□ 0.43
SCN4AP35499 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
SCN4AP35499 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN4AP35499 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN4AP35499 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN4AP35499 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.71■□□□□ 0.43
SCN4AP35499 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.71■□□□□ 0.43
SCN4AP35499 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN4AP35499 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SCN4AP35499 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN4AP35499 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SCN4AP35499 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN4AP35499 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN4AP35499 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SCN4AP35499 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC17.71■□□□□ 0.43
SCN4AP35499 CICP12-201ENST00000455801 843 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms