Protein–RNA interactions for Protein: P30408

TM4SF1, Transmembrane 4 L6 family member 1, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1P30408 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TM4SF1P30408 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.84■□□□□ 0.61
TM4SF1P30408 AL008718.2-201ENST00000609206 1313 ntBASIC18.84■□□□□ 0.61
TM4SF1P30408 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TM4SF1P30408 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.84■□□□□ 0.61
TM4SF1P30408 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TM4SF1P30408 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TM4SF1P30408 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TM4SF1P30408 AC239868.1-201ENST00000369385 493 ntBASIC18.84■□□□□ 0.61
TM4SF1P30408 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC18.84■□□□□ 0.61
TM4SF1P30408 OR2K2-202ENST00000374428 1038 ntBASIC18.84■□□□□ 0.61
TM4SF1P30408 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TM4SF1P30408 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.84■□□□□ 0.61
TM4SF1P30408 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TM4SF1P30408 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.84■□□□□ 0.61
TM4SF1P30408 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC18.84■□□□□ 0.61
TM4SF1P30408 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC18.84■□□□□ 0.61
TM4SF1P30408 RN7SL258P-201ENST00000478664 300 ntBASIC18.84■□□□□ 0.61
TM4SF1P30408 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC18.84■□□□□ 0.61
TM4SF1P30408 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18.84■□□□□ 0.61
TM4SF1P30408 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC18.84■□□□□ 0.61
TM4SF1P30408 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TM4SF1P30408 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
TM4SF1P30408 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC18.84■□□□□ 0.61
TM4SF1P30408 AC008805.1-201ENST00000590892 364 ntBASIC18.84■□□□□ 0.61
TM4SF1P30408 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC18.84■□□□□ 0.61
TM4SF1P30408 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TM4SF1P30408 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.84■□□□□ 0.61
TM4SF1P30408 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.84■□□□□ 0.61
TM4SF1P30408 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TM4SF1P30408 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TM4SF1P30408 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TM4SF1P30408 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC18.83■□□□□ 0.61
TM4SF1P30408 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TM4SF1P30408 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
TM4SF1P30408 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TM4SF1P30408 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TM4SF1P30408 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TM4SF1P30408 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TM4SF1P30408 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TM4SF1P30408 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TM4SF1P30408 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC18.83■□□□□ 0.6
TM4SF1P30408 RN7SL818P-201ENST00000485099 259 ntBASIC18.83■□□□□ 0.6
TM4SF1P30408 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC18.83■□□□□ 0.6
TM4SF1P30408 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 POU5F1P2-201ENST00000521750 823 ntBASIC18.83■□□□□ 0.6
TM4SF1P30408 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.83■□□□□ 0.6
TM4SF1P30408 DNM1P30-201ENST00000563586 452 ntBASIC18.83■□□□□ 0.6
TM4SF1P30408 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC18.83■□□□□ 0.6
TM4SF1P30408 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
TM4SF1P30408 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
TM4SF1P30408 RN7SL725P-201ENST00000606439 259 ntBASIC18.83■□□□□ 0.6
TM4SF1P30408 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.83■□□□□ 0.6
TM4SF1P30408 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.83■□□□□ 0.6
TM4SF1P30408 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TM4SF1P30408 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
TM4SF1P30408 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TM4SF1P30408 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.82■□□□□ 0.6
TM4SF1P30408 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.82■□□□□ 0.6
TM4SF1P30408 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC18.82■□□□□ 0.6
TM4SF1P30408 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC18.82■□□□□ 0.6
TM4SF1P30408 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.82■□□□□ 0.6
TM4SF1P30408 RN7SL8P-201ENST00000461771 266 ntBASIC18.82■□□□□ 0.6
TM4SF1P30408 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.82■□□□□ 0.6
TM4SF1P30408 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.82■□□□□ 0.6
TM4SF1P30408 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.82■□□□□ 0.6
TM4SF1P30408 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
TM4SF1P30408 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC18.82■□□□□ 0.6
TM4SF1P30408 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 AC007718.1-201ENST00000621078 280 ntBASIC18.82■□□□□ 0.6
TM4SF1P30408 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TM4SF1P30408 AC026471.1-201ENST00000564629 3026 ntBASIC18.82■□□□□ 0.6
TM4SF1P30408 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.82■□□□□ 0.6
TM4SF1P30408 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms