Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.12■□□□□ 0.49
HLA-DOAP06340 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC18.12■□□□□ 0.49
HLA-DOAP06340 PFN2-215ENST00000497148 743 ntTSL 4 BASIC18.12■□□□□ 0.49
HLA-DOAP06340 FAM86HP-204ENST00000513466 959 ntBASIC18.12■□□□□ 0.49
HLA-DOAP06340 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.12■□□□□ 0.49
HLA-DOAP06340 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HLA-DOAP06340 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC18.12■□□□□ 0.49
HLA-DOAP06340 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DOAP06340 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC18.12■□□□□ 0.49
HLA-DOAP06340 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HLA-DOAP06340 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DOAP06340 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DOAP06340 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 AC009090.5-201ENST00000624886 2285 ntBASIC18.11■□□□□ 0.49
HLA-DOAP06340 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.11■□□□□ 0.49
HLA-DOAP06340 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DOAP06340 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.1■□□□□ 0.49
HLA-DOAP06340 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 KRT8P44-201ENST00000441609 1350 ntBASIC18.1■□□□□ 0.49
HLA-DOAP06340 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 MIR326-201ENST00000362220 95 ntBASIC18.1■□□□□ 0.49
HLA-DOAP06340 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 AC245100.3-201ENST00000441281 285 ntBASIC18.1■□□□□ 0.49
HLA-DOAP06340 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 MIR4741-201ENST00000579822 90 ntBASIC18.1■□□□□ 0.49
HLA-DOAP06340 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 AL603764.1-201ENST00000636452 321 ntBASIC18.1■□□□□ 0.49
HLA-DOAP06340 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 AL139384.1-201ENST00000612143 3047 ntBASIC18.1■□□□□ 0.49
HLA-DOAP06340 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DOAP06340 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 AC105250.1-201ENST00000509378 2057 ntBASIC18.1■□□□□ 0.49
HLA-DOAP06340 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.1■□□□□ 0.49
HLA-DOAP06340 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 AC020907.1-201ENST00000616460 1350 ntBASIC18.09■□□□□ 0.49
HLA-DOAP06340 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 EIF3FP3-201ENST00000434851 1086 ntBASIC18.09■□□□□ 0.49
HLA-DOAP06340 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 AC243960.2-201ENST00000600996 747 ntBASIC18.09■□□□□ 0.49
HLA-DOAP06340 MIR6787-201ENST00000616675 61 ntBASIC18.09■□□□□ 0.49
HLA-DOAP06340 GPR182-203ENST00000622922 591 ntBASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms