Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.48■□□□□ 0.71
NPHP1O15259 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.48■□□□□ 0.71
NPHP1O15259 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.48■□□□□ 0.71
NPHP1O15259 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
NPHP1O15259 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC19.48■□□□□ 0.71
NPHP1O15259 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
NPHP1O15259 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC19.48■□□□□ 0.71
NPHP1O15259 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
NPHP1O15259 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 AC020914.3-201ENST00000594712 304 ntBASIC19.48■□□□□ 0.71
NPHP1O15259 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.48■□□□□ 0.71
NPHP1O15259 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
NPHP1O15259 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
NPHP1O15259 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
NPHP1O15259 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
NPHP1O15259 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.48■□□□□ 0.71
NPHP1O15259 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
NPHP1O15259 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP1O15259 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
NPHP1O15259 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
NPHP1O15259 LINC00554-201ENST00000564841 3011 ntBASIC19.47■□□□□ 0.71
NPHP1O15259 AC063926.3-201ENST00000624734 5658 ntBASIC19.47■□□□□ 0.71
NPHP1O15259 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
NPHP1O15259 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
NPHP1O15259 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 TPM3P8-201ENST00000330554 643 ntBASIC19.47■□□□□ 0.71
NPHP1O15259 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC19.47■□□□□ 0.71
NPHP1O15259 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
NPHP1O15259 AL591846.1-201ENST00000451736 433 ntBASIC19.47■□□□□ 0.71
NPHP1O15259 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP1O15259 ACTG1P17-201ENST00000558391 1119 ntBASIC19.47■□□□□ 0.71
NPHP1O15259 EEF1DP1-201ENST00000585891 896 ntBASIC19.47■□□□□ 0.71
NPHP1O15259 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC19.47■□□□□ 0.71
NPHP1O15259 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
NPHP1O15259 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP1O15259 AL391005.1-201ENST00000623953 2435 ntBASIC19.47■□□□□ 0.71
NPHP1O15259 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP1O15259 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP1O15259 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP1O15259 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
NPHP1O15259 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 TSPY26P-202ENST00000565928 3884 ntBASIC19.47■□□□□ 0.71
NPHP1O15259 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP1O15259 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP1O15259 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP1O15259 AL138709.1-201ENST00000614840 1693 ntBASIC19.46■□□□□ 0.71
NPHP1O15259 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP1O15259 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP1O15259 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP1O15259 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP1O15259 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP1O15259 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP1O15259 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP1O15259 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP1O15259 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.46■□□□□ 0.71
NPHP1O15259 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP1O15259 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP1O15259 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP1O15259 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP1O15259 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC19.46■□□□□ 0.71
NPHP1O15259 SCARNA20.5-201ENST00000516991 142 ntBASIC19.46■□□□□ 0.71
NPHP1O15259 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.46■□□□□ 0.71
NPHP1O15259 ECM1P1-201ENST00000604092 1279 ntBASIC19.46■□□□□ 0.71
NPHP1O15259 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms