Protein–RNA interactions for Protein: O00148

DDX39A, ATP-dependent RNA helicase DDX39A, humanhuman

Known RBP Predictions only

Length 427 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39AO00148 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.37■□□□□ 0.37
DDX39AO00148 MIR1909-201ENST00000411312 80 ntBASIC17.37■□□□□ 0.37
DDX39AO00148 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.37■□□□□ 0.37
DDX39AO00148 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.37■□□□□ 0.37
DDX39AO00148 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.37■□□□□ 0.37
DDX39AO00148 AL355864.2-201ENST00000447420 863 ntBASIC17.37■□□□□ 0.37
DDX39AO00148 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.37■□□□□ 0.37
DDX39AO00148 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.37■□□□□ 0.37
DDX39AO00148 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.37■□□□□ 0.37
DDX39AO00148 AC106886.1-201ENST00000568660 600 ntBASIC17.37■□□□□ 0.37
DDX39AO00148 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.37■□□□□ 0.37
DDX39AO00148 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.37■□□□□ 0.37
DDX39AO00148 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.37■□□□□ 0.37
DDX39AO00148 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
DDX39AO00148 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX39AO00148 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.37■□□□□ 0.37
DDX39AO00148 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.37■□□□□ 0.37
DDX39AO00148 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.36■□□□□ 0.37
DDX39AO00148 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
DDX39AO00148 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
DDX39AO00148 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.36■□□□□ 0.37
DDX39AO00148 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.36■□□□□ 0.37
DDX39AO00148 KRT43P-201ENST00000434019 910 ntBASIC17.36■□□□□ 0.37
DDX39AO00148 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
DDX39AO00148 AC012441.1-201ENST00000446669 685 ntBASIC17.36■□□□□ 0.37
DDX39AO00148 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.36■□□□□ 0.37
DDX39AO00148 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.36■□□□□ 0.37
DDX39AO00148 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.36■□□□□ 0.37
DDX39AO00148 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.36■□□□□ 0.37
DDX39AO00148 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.36■□□□□ 0.37
DDX39AO00148 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 AL022328.1-201ENST00000610050 478 ntBASIC17.36■□□□□ 0.37
DDX39AO00148 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
DDX39AO00148 BX539320.1-201ENST00000623759 877 ntBASIC17.36■□□□□ 0.37
DDX39AO00148 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.36■□□□□ 0.37
DDX39AO00148 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.36■□□□□ 0.37
DDX39AO00148 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.36■□□□□ 0.37
DDX39AO00148 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.36■□□□□ 0.37
DDX39AO00148 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.36■□□□□ 0.37
DDX39AO00148 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.36■□□□□ 0.37
DDX39AO00148 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX39AO00148 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 AC087481.3-201ENST00000602886 1894 ntBASIC17.35■□□□□ 0.37
DDX39AO00148 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.35■□□□□ 0.37
DDX39AO00148 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.35■□□□□ 0.37
DDX39AO00148 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.35■□□□□ 0.37
DDX39AO00148 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.35■□□□□ 0.37
DDX39AO00148 ANKRD19P-201ENST00000338192 862 ntBASIC17.35■□□□□ 0.37
DDX39AO00148 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.35■□□□□ 0.37
DDX39AO00148 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 AC022210.1-201ENST00000449856 793 ntBASIC17.35■□□□□ 0.37
DDX39AO00148 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
DDX39AO00148 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.35■□□□□ 0.37
DDX39AO00148 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.35■□□□□ 0.37
DDX39AO00148 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.35■□□□□ 0.37
DDX39AO00148 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
DDX39AO00148 AL359881.2-201ENST00000602973 570 ntBASIC17.35■□□□□ 0.37
DDX39AO00148 MIR6775-201ENST00000617557 69 ntBASIC17.35■□□□□ 0.37
DDX39AO00148 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.35■□□□□ 0.37
DDX39AO00148 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX39AO00148 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms