Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 RN7SL399P-201ENST00000471648 279 ntBASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 FAM86LP-201ENST00000478302 853 ntBASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 AC093004.1-201ENST00000508850 424 ntBASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 SLC7A15P-201ENST00000424028 1363 ntBASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 COX20P2-201ENST00000452636 358 ntBASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
ATG4BQ9Y4P1 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.65□□□□□ -0.07
ATG4BQ9Y4P1 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.07
ATG4BQ9Y4P1 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.07
ATG4BQ9Y4P1 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
ATG4BQ9Y4P1 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 AC055876.2-201ENST00000531834 546 ntBASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 MIR8072-201ENST00000614241 80 ntBASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
ATG4BQ9Y4P1 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms