Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 CRCP-204ENST00000398684 492 ntTSL 2 BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 PFN2-205ENST00000461868 613 ntTSL 2 BASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 RN7SL736P-201ENST00000613111 269 ntBASIC29.04■■■□□ 2.24
SHROOM4Q9ULL8 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 AC084364.1-201ENST00000551967 1556 ntBASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 PCDHA1-201ENST00000378133 2726 ntBASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 LY6E-208ENST00000520531 490 ntTSL 2 BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 RNF41-210ENST00000552244 716 ntTSL 3 BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
SHROOM4Q9ULL8 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 AL391005.1-201ENST00000623953 2435 ntBASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 COX6A1P2-201ENST00000620597 330 ntBASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM4Q9ULL8 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
SHROOM4Q9ULL8 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
SHROOM4Q9ULL8 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 AC098935.1-201ENST00000446057 611 ntBASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 ZACNP1-201ENST00000612259 710 ntBASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 BANP-204ENST00000393208 2283 ntTSL 2 BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC29.01■■■□□ 2.23
SHROOM4Q9ULL8 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 AC011742.3-201ENST00000439053 820 ntBASIC29■■■□□ 2.23
SHROOM4Q9ULL8 AC019193.1-201ENST00000506678 823 ntBASIC29■■■□□ 2.23
SHROOM4Q9ULL8 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 AP003171.2-201ENST00000528208 925 ntBASIC29■■■□□ 2.23
SHROOM4Q9ULL8 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM4Q9ULL8 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC29■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms