Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CHFRQ96EP1 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CHFRQ96EP1 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.66■□□□□ 0.1
CHFRQ96EP1 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.66■□□□□ 0.1
CHFRQ96EP1 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
CHFRQ96EP1 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CHFRQ96EP1 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CHFRQ96EP1 AC008894.3-201ENST00000624324 3103 ntBASIC15.66■□□□□ 0.1
CHFRQ96EP1 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 AC138028.6-201ENST00000616106 1482 ntBASIC15.65■□□□□ 0.1
CHFRQ96EP1 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 AC024909.3-201ENST00000611513 2257 ntBASIC15.65■□□□□ 0.1
CHFRQ96EP1 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 POM121L8P-201ENST00000417732 1281 ntBASIC15.65■□□□□ 0.1
CHFRQ96EP1 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 POM121L9P-203ENST00000441984 1285 ntBASIC15.65■□□□□ 0.1
CHFRQ96EP1 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 AC004066.1-201ENST00000502488 802 ntBASIC15.65■□□□□ 0.1
CHFRQ96EP1 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 AC244452.3-201ENST00000636814 210 ntBASIC15.65■□□□□ 0.1
CHFRQ96EP1 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.65■□□□□ 0.1
CHFRQ96EP1 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 AC009090.5-201ENST00000624886 2285 ntBASIC15.65■□□□□ 0.1
CHFRQ96EP1 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.65■□□□□ 0.1
CHFRQ96EP1 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHFRQ96EP1 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.64■□□□□ 0.1
CHFRQ96EP1 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHFRQ96EP1 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHFRQ96EP1 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHFRQ96EP1 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHFRQ96EP1 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CHFRQ96EP1 HNRNPA1P32-201ENST00000396326 963 ntBASIC15.64■□□□□ 0.09
CHFRQ96EP1 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 SLC25A24P2-201ENST00000415059 510 ntBASIC15.64■□□□□ 0.09
CHFRQ96EP1 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 FNTAP2-201ENST00000430308 634 ntBASIC15.64■□□□□ 0.09
CHFRQ96EP1 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CHFRQ96EP1 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHFRQ96EP1 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CHFRQ96EP1 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms