Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 FAM86HP-204ENST00000513466 959 ntBASIC15.02■□□□□ -0
LMX1AQ8TE12 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.02■□□□□ -0
LMX1AQ8TE12 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.02■□□□□ -0
LMX1AQ8TE12 AL118558.3-201ENST00000607414 1079 ntBASIC15.02■□□□□ -0
LMX1AQ8TE12 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.02■□□□□ -0
LMX1AQ8TE12 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.02■□□□□ -0
LMX1AQ8TE12 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.02■□□□□ -0
LMX1AQ8TE12 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 AC007787.1-201ENST00000588095 1583 ntBASIC15.02□□□□□ -0.01
LMX1AQ8TE12 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1AQ8TE12 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 EMC4-209ENST00000559421 497 ntTSL 2 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 AL158070.2-201ENST00000623713 1621 ntBASIC15.01□□□□□ -0.01
LMX1AQ8TE12 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.01□□□□□ -0.01
LMX1AQ8TE12 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15□□□□□ -0.01
LMX1AQ8TE12 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15□□□□□ -0.01
LMX1AQ8TE12 AL139094.1-201ENST00000405549 1188 ntBASIC15□□□□□ -0.01
LMX1AQ8TE12 BTBD6P1-201ENST00000412176 1267 ntBASIC15□□□□□ -0.01
LMX1AQ8TE12 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15□□□□□ -0.01
LMX1AQ8TE12 GOLGA2P4-201ENST00000441462 777 ntBASIC15□□□□□ -0.01
LMX1AQ8TE12 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15□□□□□ -0.01
LMX1AQ8TE12 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15□□□□□ -0.01
LMX1AQ8TE12 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
LMX1AQ8TE12 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 RN7SL48P-201ENST00000579283 293 ntBASIC15□□□□□ -0.01
LMX1AQ8TE12 AC103810.3-201ENST00000583567 96 ntBASIC15□□□□□ -0.01
LMX1AQ8TE12 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC15□□□□□ -0.01
LMX1AQ8TE12 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 PRSS30P-206ENST00000641773 873 ntBASIC15□□□□□ -0.01
LMX1AQ8TE12 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms