Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 AC105250.1-201ENST00000509378 2057 ntBASIC12.59□□□□□ -0.39
VPS13CQ709C8 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC12.58□□□□□ -0.39
VPS13CQ709C8 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC12.58□□□□□ -0.39
VPS13CQ709C8 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
VPS13CQ709C8 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
VPS13CQ709C8 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC12.58□□□□□ -0.39
VPS13CQ709C8 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.39
VPS13CQ709C8 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
VPS13CQ709C8 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
VPS13CQ709C8 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.58□□□□□ -0.39
VPS13CQ709C8 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
VPS13CQ709C8 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
VPS13CQ709C8 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 AC079112.1-201ENST00000454972 939 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 RN7SL258P-201ENST00000478664 300 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 SCARNA21-201ENST00000517026 139 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 AC103691.2-201ENST00000618824 433 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 MIR6858-201ENST00000620733 67 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 AL391005.1-201ENST00000623953 2435 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 RPS9P1-201ENST00000419943 583 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 ISCA2P1-201ENST00000425548 448 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 AL157792.1-201ENST00000488281 530 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 AC026803.1-201ENST00000569130 274 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
VPS13CQ709C8 AC112504.1-201ENST00000623415 1841 ntBASIC12.58□□□□□ -0.4
VPS13CQ709C8 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
VPS13CQ709C8 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 HLA-J-204ENST00000495278 958 ntBASIC12.57□□□□□ -0.4
VPS13CQ709C8 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 AC074138.1-201ENST00000611182 1303 ntBASIC12.57□□□□□ -0.4
VPS13CQ709C8 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 RN7SL67P-201ENST00000492147 296 ntBASIC12.57□□□□□ -0.4
VPS13CQ709C8 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 AL596087.1-201ENST00000400979 1969 ntBASIC12.57□□□□□ -0.4
VPS13CQ709C8 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 PPOX-204ENST00000462866 473 ntTSL 5 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 PAM16-211ENST00000575848 518 ntTSL 3 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 AC006453.1-201ENST00000636037 1257 ntBASIC12.57□□□□□ -0.4
VPS13CQ709C8 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms