Protein–RNA interactions for Protein: Q6STE5

SMARCD3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3Q6STE5 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SMARCD3Q6STE5 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 AC026396.1-201ENST00000419388 421 ntBASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 PGAM5P1-201ENST00000518923 814 ntBASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 AC105021.1-202ENST00000570572 669 ntBASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 AC007191.1-201ENST00000623179 2995 ntBASIC14.19□□□□□ -0.14
SMARCD3Q6STE5 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 MROH4P-201ENST00000431302 1578 ntBASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 ZBED1P1-201ENST00000502364 1930 ntBASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 FO393414.2-201ENST00000405153 598 ntBASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 AC005237.2-201ENST00000434368 219 ntBASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 ALG1L8P-201ENST00000533887 760 ntBASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 AL390755.1-201ENST00000623716 2027 ntBASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 AC015656.1-201ENST00000624209 3578 ntBASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms