Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
CXCL12P48061 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC15.22■□□□□ 0.03
CXCL12P48061 NOC2LP1-201ENST00000450578 752 ntBASIC15.22■□□□□ 0.03
CXCL12P48061 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC15.22■□□□□ 0.03
CXCL12P48061 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.22■□□□□ 0.03
CXCL12P48061 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CXCL12P48061 RTN3P1-201ENST00000536295 711 ntBASIC15.22■□□□□ 0.03
CXCL12P48061 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC15.22■□□□□ 0.03
CXCL12P48061 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.22■□□□□ 0.03
CXCL12P48061 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.22■□□□□ 0.03
CXCL12P48061 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.22■□□□□ 0.03
CXCL12P48061 AC073352.2-201ENST00000609385 439 ntBASIC15.22■□□□□ 0.03
CXCL12P48061 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.22■□□□□ 0.03
CXCL12P48061 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.22■□□□□ 0.03
CXCL12P48061 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CXCL12P48061 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.22■□□□□ 0.03
CXCL12P48061 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.22■□□□□ 0.03
CXCL12P48061 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
CXCL12P48061 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CXCL12P48061 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.21■□□□□ 0.03
CXCL12P48061 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
CXCL12P48061 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CXCL12P48061 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.21■□□□□ 0.03
CXCL12P48061 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.21■□□□□ 0.03
CXCL12P48061 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CXCL12P48061 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CXCL12P48061 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.21■□□□□ 0.03
CXCL12P48061 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CXCL12P48061 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC15.21■□□□□ 0.03
CXCL12P48061 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CXCL12P48061 AC026316.1-201ENST00000398900 414 ntBASIC15.21■□□□□ 0.03
CXCL12P48061 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.21■□□□□ 0.03
CXCL12P48061 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 AC098935.1-201ENST00000446057 611 ntBASIC15.21■□□□□ 0.03
CXCL12P48061 CEP164P1-201ENST00000455142 418 ntBASIC15.21■□□□□ 0.03
CXCL12P48061 AC090857.1-201ENST00000527400 390 ntBASIC15.21■□□□□ 0.03
CXCL12P48061 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.21■□□□□ 0.03
CXCL12P48061 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 MIR4683-201ENST00000579659 81 ntBASIC15.21■□□□□ 0.03
CXCL12P48061 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.21■□□□□ 0.03
CXCL12P48061 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.21■□□□□ 0.03
CXCL12P48061 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.21■□□□□ 0.03
CXCL12P48061 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC15.21■□□□□ 0.03
CXCL12P48061 AC103691.2-201ENST00000618824 433 ntBASIC15.21■□□□□ 0.03
CXCL12P48061 AC011491.1-203ENST00000637688 543 ntBASIC15.21■□□□□ 0.03
CXCL12P48061 NAP1L6-202ENST00000641404 1222 ntBASIC15.21■□□□□ 0.03
CXCL12P48061 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.21■□□□□ 0.03
CXCL12P48061 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CXCL12P48061 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL12P48061 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
CXCL12P48061 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL12P48061 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL12P48061 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.21■□□□□ 0.02
CXCL12P48061 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.21■□□□□ 0.02
CXCL12P48061 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
CXCL12P48061 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
CXCL12P48061 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL12P48061 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL12P48061 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL12P48061 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL12P48061 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL12P48061 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL12P48061 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.2■□□□□ 0.02
CXCL12P48061 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.2■□□□□ 0.02
CXCL12P48061 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CXCL12P48061 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CXCL12P48061 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CXCL12P48061 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CXCL12P48061 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms