Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SCN4AP35499 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SCN4AP35499 KRT17P4-201ENST00000429445 819 ntBASIC17.77■□□□□ 0.43
SCN4AP35499 AL512306.1-201ENST00000432698 848 ntBASIC17.77■□□□□ 0.43
SCN4AP35499 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SCN4AP35499 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
SCN4AP35499 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC17.77■□□□□ 0.43
SCN4AP35499 FAM86KP-201ENST00000509817 987 ntBASIC17.77■□□□□ 0.43
SCN4AP35499 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC17.77■□□□□ 0.43
SCN4AP35499 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SCN4AP35499 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC17.77■□□□□ 0.43
SCN4AP35499 AL022334.2-201ENST00000610000 484 ntBASIC17.77■□□□□ 0.43
SCN4AP35499 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
SCN4AP35499 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC17.77■□□□□ 0.43
SCN4AP35499 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SCN4AP35499 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SCN4AP35499 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.76■□□□□ 0.43
SCN4AP35499 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SCN4AP35499 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.76■□□□□ 0.43
SCN4AP35499 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 HLA-DMA-203ENST00000395305 777 ntBASIC17.76■□□□□ 0.43
SCN4AP35499 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 DPY19L2P5-201ENST00000456300 331 ntBASIC17.76■□□□□ 0.43
SCN4AP35499 AREG-202ENST00000502307 956 ntTSL 5 BASIC17.76■□□□□ 0.43
SCN4AP35499 RPS23-204ENST00000507980 836 ntTSL 2 BASIC17.76■□□□□ 0.43
SCN4AP35499 AC084752.1-201ENST00000509766 622 ntBASIC17.76■□□□□ 0.43
SCN4AP35499 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC17.76■□□□□ 0.43
SCN4AP35499 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.76■□□□□ 0.43
SCN4AP35499 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC17.76■□□□□ 0.43
SCN4AP35499 AC009560.1-201ENST00000620208 434 ntBASIC17.76■□□□□ 0.43
SCN4AP35499 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SCN4AP35499 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SCN4AP35499 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.76■□□□□ 0.43
SCN4AP35499 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN4AP35499 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 MARK2P16-201ENST00000605714 1723 ntBASIC17.75■□□□□ 0.43
SCN4AP35499 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC17.75■□□□□ 0.43
SCN4AP35499 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC17.75■□□□□ 0.43
SCN4AP35499 AC244197.1-201ENST00000456494 951 ntBASIC17.75■□□□□ 0.43
SCN4AP35499 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
SCN4AP35499 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC17.75■□□□□ 0.43
SCN4AP35499 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC17.75■□□□□ 0.43
SCN4AP35499 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC17.75■□□□□ 0.43
SCN4AP35499 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.75■□□□□ 0.43
SCN4AP35499 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC17.75■□□□□ 0.43
SCN4AP35499 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC17.75■□□□□ 0.43
SCN4AP35499 AC007326.1-201ENST00000604539 458 ntBASIC17.75■□□□□ 0.43
SCN4AP35499 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.75■□□□□ 0.43
SCN4AP35499 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.75■□□□□ 0.43
SCN4AP35499 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SCN4AP35499 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.75■□□□□ 0.43
SCN4AP35499 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN4AP35499 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC17.75■□□□□ 0.43
SCN4AP35499 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC17.75■□□□□ 0.43
SCN4AP35499 RPS5-204ENST00000598098 536 ntTSL 2 BASIC17.75■□□□□ 0.43
SCN4AP35499 NAMA-206ENST00000605377 509 ntTSL 5 BASIC17.75■□□□□ 0.43
SCN4AP35499 AP001184.1-201ENST00000637936 376 ntBASIC17.75■□□□□ 0.43
SCN4AP35499 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.74■□□□□ 0.43
SCN4AP35499 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC17.74■□□□□ 0.43
SCN4AP35499 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.74■□□□□ 0.43
SCN4AP35499 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC17.74■□□□□ 0.43
SCN4AP35499 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.74■□□□□ 0.43
SCN4AP35499 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SCN4AP35499 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SCN4AP35499 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN4AP35499 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SCN4AP35499 TLE1P1-201ENST00000422965 589 ntBASIC17.74■□□□□ 0.43
SCN4AP35499 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC17.74■□□□□ 0.43
SCN4AP35499 AC018695.6-201ENST00000614011 534 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms