Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
COL4A5P29400 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A5P29400 AC103810.10-201ENST00000606504 343 ntBASIC18.09■□□□□ 0.49
COL4A5P29400 AC084781.1-201ENST00000613737 656 ntBASIC18.09■□□□□ 0.49
COL4A5P29400 AC025262.2-201ENST00000623975 1056 ntBASIC18.09■□□□□ 0.49
COL4A5P29400 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL4A5P29400 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A5P29400 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A5P29400 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A5P29400 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
COL4A5P29400 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC18.09■□□□□ 0.49
COL4A5P29400 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL4A5P29400 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
COL4A5P29400 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A5P29400 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A5P29400 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A5P29400 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A5P29400 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A5P29400 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
COL4A5P29400 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
COL4A5P29400 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A5P29400 PCDHA14-201ENST00000506751 2298 ntBASIC18.08■□□□□ 0.48
COL4A5P29400 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
COL4A5P29400 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A5P29400 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
COL4A5P29400 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
COL4A5P29400 MIR557-201ENST00000385239 98 ntBASIC18.08■□□□□ 0.48
COL4A5P29400 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.08■□□□□ 0.48
COL4A5P29400 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC18.08■□□□□ 0.48
COL4A5P29400 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC18.08■□□□□ 0.48
COL4A5P29400 MIR6858-201ENST00000620733 67 ntBASIC18.08■□□□□ 0.48
COL4A5P29400 AL161773.1-201ENST00000624845 863 ntBASIC18.08■□□□□ 0.48
COL4A5P29400 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A5P29400 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.08■□□□□ 0.48
COL4A5P29400 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
COL4A5P29400 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A5P29400 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.08■□□□□ 0.48
COL4A5P29400 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A5P29400 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A5P29400 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A5P29400 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.08■□□□□ 0.48
COL4A5P29400 AC003102.2-201ENST00000589195 1469 ntBASIC18.07■□□□□ 0.48
COL4A5P29400 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL4A5P29400 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL4A5P29400 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A5P29400 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL4A5P29400 LINC02199-201ENST00000506655 2702 ntBASIC18.07■□□□□ 0.48
COL4A5P29400 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A5P29400 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A5P29400 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC18.07■□□□□ 0.48
COL4A5P29400 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A5P29400 AC012362.1-201ENST00000434906 739 ntBASIC18.07■□□□□ 0.48
COL4A5P29400 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A5P29400 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.07■□□□□ 0.48
COL4A5P29400 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A5P29400 POU5F1P2-201ENST00000521750 823 ntBASIC18.07■□□□□ 0.48
COL4A5P29400 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
COL4A5P29400 AC005357.2-202ENST00000590507 1060 ntBASIC18.07■□□□□ 0.48
COL4A5P29400 AC073911.3-201ENST00000624401 631 ntBASIC18.07■□□□□ 0.48
COL4A5P29400 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A5P29400 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 FRMPD2B-201ENST00000431305 1347 ntBASIC18.07■□□□□ 0.48
COL4A5P29400 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A5P29400 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL4A5P29400 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
COL4A5P29400 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A5P29400 NKILA-202ENST00000614771 2598 ntBASIC18.06■□□□□ 0.48
COL4A5P29400 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A5P29400 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL4A5P29400 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms