Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 AC015922.1-201ENST00000421102 1152 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 TSEN15P1-201ENST00000423257 515 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 GHSR-202ENST00000427970 912 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 RPL13P2-201ENST00000440687 659 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 CNN2P2-201ENST00000443536 909 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 DNAJB3-202ENST00000449667 1266 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 CNN2P3-201ENST00000450201 906 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 AL596442.2-201ENST00000610240 980 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 TEX28P1-201ENST00000613479 1221 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 TEX28P2-201ENST00000617764 1221 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 SPDYE12P-201ENST00000618416 771 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 AL136317.3-201ENST00000618497 906 ntBASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
HIF3AQ9Y2N7 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 CICP11-201ENST00000434745 2827 ntBASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 OR2I1P-210ENST00000642037 4691 ntBASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HIF3AQ9Y2N7 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 KRT18P64-201ENST00000434946 1219 ntBASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms