Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 AC107918.4-201ENST00000641966 3141 ntBASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 BX640514.1-201ENST00000583223 1918 ntBASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 CICP17-201ENST00000418553 2377 ntBASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 AL691432.3-201ENST00000621860 400 ntBASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 AC117489.1-201ENST00000625169 3217 ntBASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28BQ9BUN5 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 AZGP1P1-201ENST00000411909 902 ntBASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 RNA5SP419-201ENST00000515908 135 ntBASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC28BQ9BUN5 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms