Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NEK1Q96PY6 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NEK1Q96PY6 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
NEK1Q96PY6 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
NEK1Q96PY6 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
NEK1Q96PY6 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.53
NEK1Q96PY6 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
NEK1Q96PY6 ZBED1P1-201ENST00000502364 1930 ntBASIC18.33■□□□□ 0.53
NEK1Q96PY6 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NEK1Q96PY6 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
NEK1Q96PY6 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
NEK1Q96PY6 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
NEK1Q96PY6 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NEK1Q96PY6 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
NEK1Q96PY6 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 SPDYE19P-201ENST00000338590 713 ntBASIC18.33■□□□□ 0.52
NEK1Q96PY6 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 AC104457.1-201ENST00000401024 814 ntBASIC18.33■□□□□ 0.52
NEK1Q96PY6 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 AC023824.1-201ENST00000562945 2975 ntBASIC18.33■□□□□ 0.52
NEK1Q96PY6 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NEK1Q96PY6 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.33■□□□□ 0.52
NEK1Q96PY6 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 GNAQP1-201ENST00000444815 1067 ntBASIC18.32■□□□□ 0.52
NEK1Q96PY6 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 TPRX2P-201ENST00000535362 881 ntBASIC18.32■□□□□ 0.52
NEK1Q96PY6 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 AP000845.1-201ENST00000581677 2131 ntBASIC18.32■□□□□ 0.52
NEK1Q96PY6 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
NEK1Q96PY6 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK1Q96PY6 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NEK1Q96PY6 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.31■□□□□ 0.52
NEK1Q96PY6 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NEK1Q96PY6 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK1Q96PY6 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK1Q96PY6 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK1Q96PY6 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC18.31■□□□□ 0.52
NEK1Q96PY6 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK1Q96PY6 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK1Q96PY6 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
NEK1Q96PY6 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NEK1Q96PY6 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
NEK1Q96PY6 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK1Q96PY6 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC18.31■□□□□ 0.52
NEK1Q96PY6 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.31■□□□□ 0.52
NEK1Q96PY6 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.31■□□□□ 0.52
NEK1Q96PY6 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK1Q96PY6 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.31■□□□□ 0.52
NEK1Q96PY6 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
NEK1Q96PY6 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
NEK1Q96PY6 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms