Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.04■□□□□ -0
LMX1AQ8TE12 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.04■□□□□ -0
LMX1AQ8TE12 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.04■□□□□ -0
LMX1AQ8TE12 MIR4741-201ENST00000579822 90 ntBASIC15.04■□□□□ -0
LMX1AQ8TE12 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.04■□□□□ -0
LMX1AQ8TE12 ECM1P1-201ENST00000604092 1279 ntBASIC15.04■□□□□ -0
LMX1AQ8TE12 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.04■□□□□ -0
LMX1AQ8TE12 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
LMX1AQ8TE12 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
LMX1AQ8TE12 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.04■□□□□ -0
LMX1AQ8TE12 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
LMX1AQ8TE12 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.04■□□□□ -0
LMX1AQ8TE12 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
LMX1AQ8TE12 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 AC020916.1-201ENST00000587762 1774 ntBASIC15.03■□□□□ -0
LMX1AQ8TE12 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.03■□□□□ -0
LMX1AQ8TE12 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.03■□□□□ -0
LMX1AQ8TE12 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
LMX1AQ8TE12 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
LMX1AQ8TE12 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.03■□□□□ -0
LMX1AQ8TE12 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
LMX1AQ8TE12 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
LMX1AQ8TE12 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.03■□□□□ -0
LMX1AQ8TE12 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
LMX1AQ8TE12 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.03■□□□□ -0
LMX1AQ8TE12 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.03■□□□□ -0
LMX1AQ8TE12 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 AC006453.4-201ENST00000636949 1252 ntBASIC15.03■□□□□ -0
LMX1AQ8TE12 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
LMX1AQ8TE12 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 PRAL-201ENST00000624952 3286 ntBASIC15.03■□□□□ -0
LMX1AQ8TE12 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
LMX1AQ8TE12 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.03■□□□□ -0
LMX1AQ8TE12 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
LMX1AQ8TE12 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1AQ8TE12 AC092127.1-201ENST00000567093 3455 ntBASIC15.02■□□□□ -0
LMX1AQ8TE12 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.02■□□□□ -0
LMX1AQ8TE12 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.02■□□□□ -0
LMX1AQ8TE12 AL354989.2-201ENST00000435838 1540 ntBASIC15.02■□□□□ -0
LMX1AQ8TE12 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
LMX1AQ8TE12 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.02■□□□□ -0
LMX1AQ8TE12 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
LMX1AQ8TE12 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
LMX1AQ8TE12 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.02■□□□□ -0
LMX1AQ8TE12 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
LMX1AQ8TE12 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
LMX1AQ8TE12 Z93015.1-201ENST00000451718 390 ntBASIC15.02■□□□□ -0
LMX1AQ8TE12 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.02■□□□□ -0
LMX1AQ8TE12 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.02■□□□□ -0
LMX1AQ8TE12 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.02■□□□□ -0
LMX1AQ8TE12 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms