Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 AC106794.1-201ENST00000506935 792 ntBASIC12.6□□□□□ -0.39
VPS13CQ709C8 RN7SL596P-201ENST00000582123 288 ntBASIC12.6□□□□□ -0.39
VPS13CQ709C8 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 CASP16P-204ENST00000635032 809 ntBASIC12.6□□□□□ -0.39
VPS13CQ709C8 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 PCDHA1-201ENST00000378133 2726 ntBASIC12.6□□□□□ -0.39
VPS13CQ709C8 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 REXO1L4P-201ENST00000605109 1937 ntBASIC12.6□□□□□ -0.39
VPS13CQ709C8 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 NPPA-201ENST00000376476 728 ntTSL 3 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 B9D1-203ENST00000395615 805 ntTSL 3 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 AL139094.1-201ENST00000405549 1188 ntBASIC12.6□□□□□ -0.39
VPS13CQ709C8 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 MIR557-201ENST00000385239 98 ntBASIC12.6□□□□□ -0.39
VPS13CQ709C8 NDUFAB1P1-201ENST00000404262 460 ntBASIC12.6□□□□□ -0.39
VPS13CQ709C8 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 AC073150.1-201ENST00000450406 1084 ntBASIC12.6□□□□□ -0.39
VPS13CQ709C8 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 KRT8P21-201ENST00000430398 1491 ntBASIC12.6□□□□□ -0.39
VPS13CQ709C8 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.6□□□□□ -0.39
VPS13CQ709C8 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
VPS13CQ709C8 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 OR2K2-202ENST00000374428 1038 ntBASIC12.59□□□□□ -0.39
VPS13CQ709C8 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 AC008723.1-201ENST00000506922 207 ntBASIC12.59□□□□□ -0.39
VPS13CQ709C8 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 AL161773.1-201ENST00000624845 863 ntBASIC12.59□□□□□ -0.39
VPS13CQ709C8 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
VPS13CQ709C8 AC084364.1-201ENST00000551967 1556 ntBASIC12.59□□□□□ -0.39
VPS13CQ709C8 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC12.59□□□□□ -0.39
VPS13CQ709C8 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms