Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 AC104457.1-201ENST00000401024 814 ntBASIC16.73■□□□□ 0.27
KRT39Q6A163 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.73■□□□□ 0.27
KRT39Q6A163 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.73■□□□□ 0.27
KRT39Q6A163 AC055876.2-201ENST00000531834 546 ntBASIC16.73■□□□□ 0.27
KRT39Q6A163 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
KRT39Q6A163 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.73■□□□□ 0.27
KRT39Q6A163 AC099568.2-201ENST00000609194 695 ntBASIC16.73■□□□□ 0.27
KRT39Q6A163 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
KRT39Q6A163 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.73■□□□□ 0.27
KRT39Q6A163 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
KRT39Q6A163 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
KRT39Q6A163 SLC7A15P-201ENST00000424028 1363 ntBASIC16.73■□□□□ 0.27
KRT39Q6A163 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
KRT39Q6A163 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.73■□□□□ 0.27
KRT39Q6A163 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
KRT39Q6A163 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
KRT39Q6A163 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.72■□□□□ 0.27
KRT39Q6A163 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.72■□□□□ 0.27
KRT39Q6A163 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
KRT39Q6A163 DFFBP1-201ENST00000433250 979 ntBASIC16.72■□□□□ 0.27
KRT39Q6A163 GAPDHP40-201ENST00000505218 1006 ntBASIC16.72■□□□□ 0.27
KRT39Q6A163 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.72■□□□□ 0.27
KRT39Q6A163 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.72■□□□□ 0.27
KRT39Q6A163 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.72■□□□□ 0.27
KRT39Q6A163 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.72■□□□□ 0.27
KRT39Q6A163 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.72■□□□□ 0.27
KRT39Q6A163 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 TCAF2P1-201ENST00000291129 2421 ntBASIC16.72■□□□□ 0.27
KRT39Q6A163 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.72■□□□□ 0.27
KRT39Q6A163 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
KRT39Q6A163 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.72■□□□□ 0.27
KRT39Q6A163 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 WASH3P-207ENST00000560956 1394 ntBASIC16.72■□□□□ 0.27
KRT39Q6A163 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.72■□□□□ 0.27
KRT39Q6A163 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.72■□□□□ 0.27
KRT39Q6A163 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
KRT39Q6A163 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.72■□□□□ 0.27
KRT39Q6A163 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
KRT39Q6A163 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
KRT39Q6A163 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
KRT39Q6A163 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
KRT39Q6A163 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.71■□□□□ 0.27
KRT39Q6A163 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.71■□□□□ 0.27
KRT39Q6A163 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.71■□□□□ 0.27
KRT39Q6A163 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.71■□□□□ 0.27
KRT39Q6A163 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.71■□□□□ 0.27
KRT39Q6A163 MIR661-201ENST00000384842 89 ntBASIC16.71■□□□□ 0.27
KRT39Q6A163 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
KRT39Q6A163 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.71■□□□□ 0.27
KRT39Q6A163 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
KRT39Q6A163 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.71■□□□□ 0.27
KRT39Q6A163 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
KRT39Q6A163 RN7SL204P-201ENST00000582831 262 ntBASIC16.71■□□□□ 0.27
KRT39Q6A163 LINC02560-201ENST00000596379 459 ntBASIC16.71■□□□□ 0.27
KRT39Q6A163 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms