Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC141586.1-203ENST00000567242 366 ntBASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 AC020922.3-201ENST00000595064 547 ntBASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 AC051619.9-201ENST00000623237 597 ntBASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 TBC1D3J-201ENST00000620719 1426 ntBASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 AC006453.1-201ENST00000636037 1257 ntBASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 AL805961.1-201ENST00000642026 753 ntBASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC88AQ3V6T2 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 RCC2P8-201ENST00000502779 1035 ntBASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 AC025181.2-201ENST00000606994 802 ntBASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC88AQ3V6T2 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 AC021723.1-201ENST00000486306 515 ntBASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 NAGK-204ENST00000443872 878 ntTSL 3 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 RN7SL818P-201ENST00000485099 259 ntBASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 RN7SL725P-201ENST00000606439 259 ntBASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 AC092171.5-201ENST00000608012 942 ntBASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 KRT8P21-201ENST00000430398 1491 ntBASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC88AQ3V6T2 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms