Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.56□□□□□ -0.4
CX3CL1P78423 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.56□□□□□ -0.4
CX3CL1P78423 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 AC092580.3-201ENST00000430932 139 ntBASIC12.56□□□□□ -0.4
CX3CL1P78423 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.56□□□□□ -0.4
CX3CL1P78423 RN7SL618P-201ENST00000477850 296 ntBASIC12.56□□□□□ -0.4
CX3CL1P78423 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC12.56□□□□□ -0.4
CX3CL1P78423 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC12.56□□□□□ -0.4
CX3CL1P78423 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.56□□□□□ -0.4
CX3CL1P78423 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC12.56□□□□□ -0.4
CX3CL1P78423 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.56□□□□□ -0.4
CX3CL1P78423 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
CX3CL1P78423 AC093512.1-201ENST00000617969 520 ntBASIC12.56□□□□□ -0.4
CX3CL1P78423 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
CX3CL1P78423 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC12.56□□□□□ -0.4
CX3CL1P78423 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC12.56□□□□□ -0.4
CX3CL1P78423 RAB34-223ENST00000636154 730 ntTSL 2 BASIC12.56□□□□□ -0.4
CX3CL1P78423 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC12.56□□□□□ -0.4
CX3CL1P78423 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.56□□□□□ -0.4
CX3CL1P78423 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
CX3CL1P78423 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC12.56□□□□□ -0.4
CX3CL1P78423 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.56□□□□□ -0.4
CX3CL1P78423 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC12.56□□□□□ -0.4
CX3CL1P78423 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC12.56□□□□□ -0.4
CX3CL1P78423 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CX3CL1P78423 AL607033.1-201ENST00000623900 1599 ntBASIC12.56□□□□□ -0.4
CX3CL1P78423 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.56□□□□□ -0.4
CX3CL1P78423 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
CX3CL1P78423 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
CX3CL1P78423 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC12.55□□□□□ -0.4
CX3CL1P78423 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.55□□□□□ -0.4
CX3CL1P78423 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC12.55□□□□□ -0.4
CX3CL1P78423 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC12.55□□□□□ -0.4
CX3CL1P78423 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.55□□□□□ -0.4
CX3CL1P78423 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.55□□□□□ -0.4
CX3CL1P78423 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12.55□□□□□ -0.4
CX3CL1P78423 MPI-209ENST00000564003 1195 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC12.55□□□□□ -0.4
CX3CL1P78423 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC12.55□□□□□ -0.4
CX3CL1P78423 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC12.55□□□□□ -0.4
CX3CL1P78423 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC12.55□□□□□ -0.4
CX3CL1P78423 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC12.55□□□□□ -0.4
CX3CL1P78423 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 AC087499.5-201ENST00000452760 1342 ntBASIC12.55□□□□□ -0.4
CX3CL1P78423 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CX3CL1P78423 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 AC106881.1-201ENST00000605849 3329 ntBASIC12.55□□□□□ -0.4
CX3CL1P78423 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms