Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 AL136379.1-201ENST00000623471 2642 ntBASIC15.29■□□□□ 0.04
LIMK1P53667 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.29■□□□□ 0.04
LIMK1P53667 AC079328.2-201ENST00000561241 3354 ntBASIC15.28■□□□□ 0.04
LIMK1P53667 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.28■□□□□ 0.04
LIMK1P53667 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
LIMK1P53667 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LIMK1P53667 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 DRD5P1-201ENST00000456605 1438 ntBASIC15.28■□□□□ 0.04
LIMK1P53667 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LIMK1P53667 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LIMK1P53667 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.28■□□□□ 0.04
LIMK1P53667 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.28■□□□□ 0.04
LIMK1P53667 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.28■□□□□ 0.04
LIMK1P53667 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.28■□□□□ 0.04
LIMK1P53667 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.28■□□□□ 0.04
LIMK1P53667 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.04
LIMK1P53667 AC145423.3-201ENST00000615987 467 ntBASIC15.28■□□□□ 0.04
LIMK1P53667 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC15.28■□□□□ 0.04
LIMK1P53667 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.28■□□□□ 0.04
LIMK1P53667 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
LIMK1P53667 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.28■□□□□ 0.04
LIMK1P53667 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.28■□□□□ 0.04
LIMK1P53667 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.28■□□□□ 0.04
LIMK1P53667 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LIMK1P53667 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LIMK1P53667 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIMK1P53667 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.28■□□□□ 0.04
LIMK1P53667 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIMK1P53667 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
LIMK1P53667 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIMK1P53667 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIMK1P53667 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIMK1P53667 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.27■□□□□ 0.04
LIMK1P53667 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIMK1P53667 PCGF3-213ENST00000620529 1899 ntBASIC15.27■□□□□ 0.04
LIMK1P53667 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
LIMK1P53667 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LIMK1P53667 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
LIMK1P53667 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.27■□□□□ 0.04
LIMK1P53667 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.27■□□□□ 0.04
LIMK1P53667 AC022532.1-201ENST00000624563 1728 ntBASIC15.27■□□□□ 0.04
LIMK1P53667 LINC01144-201ENST00000626198 1710 ntBASIC15.27■□□□□ 0.04
LIMK1P53667 LBH-202ENST00000401506 485 ntTSL 3 BASIC15.27■□□□□ 0.04
LIMK1P53667 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LIMK1P53667 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC15.27■□□□□ 0.04
LIMK1P53667 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
LIMK1P53667 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
LIMK1P53667 KRT18P43-201ENST00000469825 1281 ntBASIC15.27■□□□□ 0.04
LIMK1P53667 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.27■□□□□ 0.04
LIMK1P53667 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.27■□□□□ 0.04
LIMK1P53667 FTLP10-202ENST00000505798 471 ntBASIC15.27■□□□□ 0.04
LIMK1P53667 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.27■□□□□ 0.04
LIMK1P53667 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.27■□□□□ 0.04
LIMK1P53667 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC15.27■□□□□ 0.04
LIMK1P53667 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
LIMK1P53667 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
LIMK1P53667 MIR3907-201ENST00000579424 151 ntBASIC15.27■□□□□ 0.04
LIMK1P53667 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LIMK1P53667 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.27■□□□□ 0.03
LIMK1P53667 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
LIMK1P53667 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
LIMK1P53667 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
LIMK1P53667 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.27■□□□□ 0.03
LIMK1P53667 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIMK1P53667 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIMK1P53667 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
LIMK1P53667 AL603832.2-201ENST00000566195 2125 ntBASIC15.26■□□□□ 0.03
LIMK1P53667 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms