Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
HOXA1P49639 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 ADAMTS7P1-201ENST00000613213 4793 ntBASIC12.98□□□□□ -0.33
HOXA1P49639 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC12.98□□□□□ -0.33
HOXA1P49639 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXA1P49639 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXA1P49639 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXA1P49639 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
HOXA1P49639 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 CICP16-201ENST00000502609 2813 ntBASIC12.97□□□□□ -0.33
HOXA1P49639 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXA1P49639 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
HOXA1P49639 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
HOXA1P49639 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC12.97□□□□□ -0.33
HOXA1P49639 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC12.97□□□□□ -0.33
HOXA1P49639 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 PRSS29P-201ENST00000440800 595 ntBASIC12.97□□□□□ -0.33
HOXA1P49639 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC12.97□□□□□ -0.33
HOXA1P49639 TBCB-205ENST00000585746 875 ntTSL 3 BASIC12.97□□□□□ -0.33
HOXA1P49639 TP73-AS1-207ENST00000624167 988 ntBASIC12.97□□□□□ -0.33
HOXA1P49639 AC117500.6-201ENST00000624871 588 ntBASIC12.97□□□□□ -0.33
HOXA1P49639 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXA1P49639 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXA1P49639 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXA1P49639 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 INVS-201ENST00000262456 2968 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXA1P49639 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC12.97□□□□□ -0.33
HOXA1P49639 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXA1P49639 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.96□□□□□ -0.33
HOXA1P49639 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
HOXA1P49639 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
HOXA1P49639 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC12.96□□□□□ -0.33
HOXA1P49639 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
HOXA1P49639 KRT18P67-201ENST00000432816 1264 ntBASIC12.96□□□□□ -0.33
HOXA1P49639 AC018712.1-201ENST00000455767 687 ntBASIC12.96□□□□□ -0.33
HOXA1P49639 AC092910.1-201ENST00000482027 1129 ntBASIC12.96□□□□□ -0.33
HOXA1P49639 AC012640.2-201ENST00000561606 901 ntBASIC12.96□□□□□ -0.33
HOXA1P49639 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
HOXA1P49639 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC12.96□□□□□ -0.33
HOXA1P49639 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.33
HOXA1P49639 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms