Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
SOX2P48431 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
SOX2P48431 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
SOX2P48431 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.73□□□□□ -0.21
SOX2P48431 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 CBR1-202ENST00000399191 838 ntTSL 3 BASIC13.73□□□□□ -0.21
SOX2P48431 AC142381.1-201ENST00000426099 345 ntBASIC13.73□□□□□ -0.21
SOX2P48431 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.73□□□□□ -0.21
SOX2P48431 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 AL139010.1-201ENST00000454878 894 ntBASIC13.73□□□□□ -0.21
SOX2P48431 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC13.73□□□□□ -0.21
SOX2P48431 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 SLC25A6P4-201ENST00000586535 553 ntBASIC13.73□□□□□ -0.21
SOX2P48431 AC008267.7-201ENST00000624570 1194 ntBASIC13.73□□□□□ -0.21
SOX2P48431 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.73□□□□□ -0.21
SOX2P48431 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
SOX2P48431 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
SOX2P48431 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
SOX2P48431 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX2P48431 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX2P48431 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX2P48431 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX2P48431 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
SOX2P48431 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC13.72□□□□□ -0.21
SOX2P48431 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX2P48431 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SOX2P48431 TFAMP1-201ENST00000412727 736 ntBASIC13.72□□□□□ -0.21
SOX2P48431 AL450487.1-201ENST00000426799 995 ntBASIC13.72□□□□□ -0.21
SOX2P48431 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
SOX2P48431 AL671277.1-201ENST00000429656 993 ntBASIC13.72□□□□□ -0.21
SOX2P48431 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.72□□□□□ -0.21
SOX2P48431 AL662844.1-201ENST00000546340 181 ntBASIC13.72□□□□□ -0.21
SOX2P48431 HNRNPUP1-201ENST00000554987 333 ntBASIC13.72□□□□□ -0.21
SOX2P48431 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC13.72□□□□□ -0.21
SOX2P48431 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC13.72□□□□□ -0.21
SOX2P48431 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.72□□□□□ -0.21
SOX2P48431 AC092865.6-201ENST00000642101 219 ntBASIC13.72□□□□□ -0.21
SOX2P48431 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX2P48431 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
SOX2P48431 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.72□□□□□ -0.21
SOX2P48431 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
SOX2P48431 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
SOX2P48431 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 CICP11-201ENST00000434745 2827 ntBASIC13.72□□□□□ -0.21
SOX2P48431 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
SOX2P48431 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX2P48431 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms