Protein–RNA interactions for Protein: Q9UPX8

SHANK2, SH3 and multiple ankyrin repeat domains protein 2, humanhuman

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2Q9UPX8 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK2Q9UPX8 AC091544.8-201ENST00000619490 361 ntBASIC22.54■■□□□ 1.2
SHANK2Q9UPX8 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SHANK2Q9UPX8 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 AP000845.1-201ENST00000581677 2131 ntBASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 AC125604.1-201ENST00000496255 707 ntBASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 MIR4750-201ENST00000584564 56 ntBASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 AF254983.2-201ENST00000612331 135 ntBASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK2Q9UPX8 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 AC092850.2-201ENST00000623821 2697 ntBASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 AC009779.1-201ENST00000551138 283 ntBASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 EID1-202ENST00000560490 584 ntTSL 3 BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 AC090164.2-201ENST00000611487 516 ntBASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC22.52■■□□□ 1.2
SHANK2Q9UPX8 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.19
SHANK2Q9UPX8 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.19
SHANK2Q9UPX8 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 AK6-201ENST00000380818 1183 ntTSL 2 BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 NUP210P1-202ENST00000504322 710 ntBASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 DUX4L46-201ENST00000566845 751 ntBASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 AL132994.2-201ENST00000603120 687 ntBASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC22.51■■□□□ 1.19
SHANK2Q9UPX8 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 AC126365.1-201ENST00000578585 1514 ntBASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 FAM58BP-201ENST00000439056 645 ntBASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 HLA-J-204ENST00000495278 958 ntBASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 GCOM2-201ENST00000509133 1104 ntBASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 AC131206.1-201ENST00000538078 1211 ntBASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 FGFR3P5-201ENST00000564496 886 ntBASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 CU633904.3-201ENST00000624042 1029 ntBASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC22.5■■□□□ 1.19
SHANK2Q9UPX8 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms