Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 NFIC-211ENST00000641145 8399 ntBASIC12.01□□□□□ -0.49
CCDC140Q96MF4 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 NID2-208ENST00000617139 3827 ntTSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 MROH4P-201ENST00000431302 1578 ntBASIC12.01□□□□□ -0.49
CCDC140Q96MF4 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
CCDC140Q96MF4 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC12□□□□□ -0.49
CCDC140Q96MF4 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
CCDC140Q96MF4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC12□□□□□ -0.49
CCDC140Q96MF4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC12□□□□□ -0.49
CCDC140Q96MF4 BCRP1-201ENST00000444246 691 ntBASIC12□□□□□ -0.49
CCDC140Q96MF4 SPTLC1P1-201ENST00000447199 261 ntBASIC12□□□□□ -0.49
CCDC140Q96MF4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC12□□□□□ -0.49
CCDC140Q96MF4 AC093004.1-201ENST00000508850 424 ntBASIC12□□□□□ -0.49
CCDC140Q96MF4 SERBP1P5-201ENST00000510079 1181 ntBASIC12□□□□□ -0.49
CCDC140Q96MF4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC12□□□□□ -0.49
CCDC140Q96MF4 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12□□□□□ -0.49
CCDC140Q96MF4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC12□□□□□ -0.49
CCDC140Q96MF4 SPCS2P1-201ENST00000561636 679 ntBASIC12□□□□□ -0.49
CCDC140Q96MF4 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC12□□□□□ -0.49
CCDC140Q96MF4 AC011467.4-201ENST00000594891 528 ntBASIC12□□□□□ -0.49
CCDC140Q96MF4 AL355385.1-201ENST00000606123 409 ntBASIC12□□□□□ -0.49
CCDC140Q96MF4 AL645728.2-202ENST00000641679 227 ntBASIC12□□□□□ -0.49
CCDC140Q96MF4 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
CCDC140Q96MF4 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC12□□□□□ -0.49
CCDC140Q96MF4 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
CCDC140Q96MF4 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12□□□□□ -0.49
CCDC140Q96MF4 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
CCDC140Q96MF4 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC12□□□□□ -0.49
CCDC140Q96MF4 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
CCDC140Q96MF4 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12□□□□□ -0.49
CCDC140Q96MF4 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 OSM-203ENST00000403463 464 ntTSL 3 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC11.99□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms