Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 CICP14-201ENST00000629111 2732 ntBASIC16.8■□□□□ 0.28
CCDC42Q96M95 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 YBX2P1-201ENST00000394192 760 ntBASIC16.8■□□□□ 0.28
CCDC42Q96M95 AL353705.2-201ENST00000428243 662 ntBASIC16.8■□□□□ 0.28
CCDC42Q96M95 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 AC069335.1-201ENST00000489972 472 ntBASIC16.8■□□□□ 0.28
CCDC42Q96M95 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 AC120114.3-201ENST00000611923 658 ntBASIC16.8■□□□□ 0.28
CCDC42Q96M95 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC42Q96M95 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CCDC42Q96M95 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 ACE3P-201ENST00000423435 1973 ntBASIC16.79■□□□□ 0.28
CCDC42Q96M95 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.79■□□□□ 0.28
CCDC42Q96M95 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 FO393414.2-201ENST00000405153 598 ntBASIC16.79■□□□□ 0.28
CCDC42Q96M95 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 AC055717.3-201ENST00000622967 595 ntBASIC16.79■□□□□ 0.28
CCDC42Q96M95 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms