Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AL109954.1-202ENST00000564051 2148 ntBASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 AC023024.2-201ENST00000623561 1993 ntBASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 SLC25A24P2-201ENST00000415059 510 ntBASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 TDH-203ENST00000531764 1110 ntBASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 MIR5189-201ENST00000577370 114 ntBASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 AC010328.2-201ENST00000597698 1111 ntBASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-3Q8TAU0 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 AGER-203ENST00000375065 665 ntTSL 2 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 CU634019.7-201ENST00000624153 1185 ntBASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 FP236241.2-201ENST00000624906 1185 ntBASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-3Q8TAU0 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AGER-206ENST00000375070 1463 ntTSL 5 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AC005229.1-201ENST00000392885 409 ntBASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AC134915.1-201ENST00000426461 574 ntBASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AP000812.2-201ENST00000538934 718 ntBASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms