Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 AC104457.1-201ENST00000401024 814 ntBASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 HLA-V-201ENST00000429037 534 ntBASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 C2orf27AP3-201ENST00000434123 579 ntBASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 AC114812.1-204ENST00000449669 728 ntBASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 FO681548.1-201ENST00000455617 1132 ntBASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 AL354718.3-201ENST00000616414 581 ntBASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 CR382287.1-201ENST00000623954 586 ntBASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC60Q8IWA6 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.14■□□□□ 0.34
CCDC60Q8IWA6 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CCDC60Q8IWA6 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
CCDC60Q8IWA6 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.14■□□□□ 0.34
CCDC60Q8IWA6 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 HYMAI-201ENST00000635591 3347 ntBASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 AL139094.1-201ENST00000405549 1188 ntBASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 CNN2P8-201ENST00000421872 913 ntBASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 NUS1P3-201ENST00000423502 862 ntBASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 AC026954.1-201ENST00000429771 1293 ntBASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 FAM197Y7-201ENST00000432892 766 ntBASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 CSF2RBP1-201ENST00000447905 391 ntBASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms