Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 TCAF1P1-201ENST00000414990 2232 ntBASIC13.98□□□□□ -0.17
CCDC58Q4VC31 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 MED16-214ENST00000617672 554 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
CCDC58Q4VC31 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 AC023024.2-201ENST00000623561 1993 ntBASIC13.97□□□□□ -0.17
CCDC58Q4VC31 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 GOLGA2P9-201ENST00000596977 1937 ntBASIC13.97□□□□□ -0.17
CCDC58Q4VC31 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC58Q4VC31 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 ZBED1P1-201ENST00000502364 1930 ntBASIC13.96□□□□□ -0.17
CCDC58Q4VC31 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC58Q4VC31 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms