Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TFF3Q07654 AL022328.3-201ENST00000607943 679 ntBASIC13.64□□□□□ -0.23
TFF3Q07654 AC105917.1-201ENST00000506637 2539 ntBASIC13.64□□□□□ -0.23
TFF3Q07654 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC13.64□□□□□ -0.23
TFF3Q07654 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.64□□□□□ -0.23
TFF3Q07654 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.64□□□□□ -0.23
TFF3Q07654 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TFF3Q07654 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
TFF3Q07654 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TFF3Q07654 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TFF3Q07654 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TFF3Q07654 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
TFF3Q07654 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
TFF3Q07654 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.63□□□□□ -0.23
TFF3Q07654 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.63□□□□□ -0.23
TFF3Q07654 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
TFF3Q07654 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.63□□□□□ -0.23
TFF3Q07654 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.63□□□□□ -0.23
TFF3Q07654 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC13.63□□□□□ -0.23
TFF3Q07654 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC13.63□□□□□ -0.23
TFF3Q07654 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 ALOX12P2-203ENST00000570921 1945 ntBASIC13.63□□□□□ -0.23
TFF3Q07654 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
TFF3Q07654 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.63□□□□□ -0.23
TFF3Q07654 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.63□□□□□ -0.23
TFF3Q07654 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.63□□□□□ -0.23
TFF3Q07654 CALR4P-201ENST00000431943 946 ntBASIC13.63□□□□□ -0.23
TFF3Q07654 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.63□□□□□ -0.23
TFF3Q07654 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.63□□□□□ -0.23
TFF3Q07654 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC13.63□□□□□ -0.23
TFF3Q07654 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.63□□□□□ -0.23
TFF3Q07654 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.63□□□□□ -0.23
TFF3Q07654 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.63□□□□□ -0.23
TFF3Q07654 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.63□□□□□ -0.23
TFF3Q07654 AC138951.2-201ENST00000623455 1161 ntBASIC13.63□□□□□ -0.23
TFF3Q07654 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
TFF3Q07654 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC13.63□□□□□ -0.23
TFF3Q07654 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.63□□□□□ -0.23
TFF3Q07654 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
TFF3Q07654 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.63□□□□□ -0.23
TFF3Q07654 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
TFF3Q07654 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.63□□□□□ -0.23
TFF3Q07654 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TFF3Q07654 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
TFF3Q07654 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC13.62□□□□□ -0.23
TFF3Q07654 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.62□□□□□ -0.23
TFF3Q07654 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.62□□□□□ -0.23
TFF3Q07654 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
TFF3Q07654 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
TFF3Q07654 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.62□□□□□ -0.23
TFF3Q07654 AC018892.3-201ENST00000623986 2499 ntBASIC13.62□□□□□ -0.23
TFF3Q07654 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.62□□□□□ -0.23
TFF3Q07654 AC007969.1-201ENST00000433675 447 ntBASIC13.62□□□□□ -0.23
TFF3Q07654 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.62□□□□□ -0.23
TFF3Q07654 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC13.62□□□□□ -0.23
TFF3Q07654 AL591846.1-201ENST00000451736 433 ntBASIC13.62□□□□□ -0.23
TFF3Q07654 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 PARP8-218ENST00000513738 596 ntTSL 4 BASIC13.62□□□□□ -0.23
TFF3Q07654 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC13.62□□□□□ -0.23
TFF3Q07654 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 RHOQP1-201ENST00000555758 579 ntBASIC13.62□□□□□ -0.23
TFF3Q07654 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.62□□□□□ -0.23
TFF3Q07654 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.62□□□□□ -0.23
TFF3Q07654 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.62□□□□□ -0.23
TFF3Q07654 AC145423.3-201ENST00000615987 467 ntBASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms