Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CCNA1P78396 KRT8P4-201ENST00000509735 1454 ntBASIC17.5■□□□□ 0.39
CCNA1P78396 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 AC092364.2-201ENST00000596710 2692 ntBASIC17.49■□□□□ 0.39
CCNA1P78396 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CCNA1P78396 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CCNA1P78396 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
CCNA1P78396 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.49■□□□□ 0.39
CCNA1P78396 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC17.49■□□□□ 0.39
CCNA1P78396 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CCNA1P78396 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CCNA1P78396 AC016700.1-201ENST00000429424 312 ntBASIC17.49■□□□□ 0.39
CCNA1P78396 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.49■□□□□ 0.39
CCNA1P78396 RN7SL769P-201ENST00000469386 295 ntBASIC17.49■□□□□ 0.39
CCNA1P78396 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.49■□□□□ 0.39
CCNA1P78396 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 AC105129.2-201ENST00000559536 390 ntBASIC17.49■□□□□ 0.39
CCNA1P78396 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 KLK3-207ENST00000595952 969 ntTSL 3 BASIC17.49■□□□□ 0.39
CCNA1P78396 CU633904.3-201ENST00000624042 1029 ntBASIC17.49■□□□□ 0.39
CCNA1P78396 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.49■□□□□ 0.39
CCNA1P78396 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.49■□□□□ 0.39
CCNA1P78396 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CCNA1P78396 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CCNA1P78396 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CCNA1P78396 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
CCNA1P78396 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CCNA1P78396 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CCNA1P78396 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCNA1P78396 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
CCNA1P78396 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.49■□□□□ 0.39
CCNA1P78396 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCNA1P78396 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CCNA1P78396 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.48■□□□□ 0.39
CCNA1P78396 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCNA1P78396 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 PRORSD1P-202ENST00000563365 2154 ntBASIC17.48■□□□□ 0.39
CCNA1P78396 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.48■□□□□ 0.39
CCNA1P78396 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.48■□□□□ 0.39
CCNA1P78396 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.48■□□□□ 0.39
CCNA1P78396 NKAIN1P1-201ENST00000435754 582 ntBASIC17.48■□□□□ 0.39
CCNA1P78396 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.48■□□□□ 0.39
CCNA1P78396 AL391280.1-201ENST00000506969 1062 ntBASIC17.48■□□□□ 0.39
CCNA1P78396 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.48■□□□□ 0.39
CCNA1P78396 AC044849.1-201ENST00000519737 1188 ntBASIC17.48■□□□□ 0.39
CCNA1P78396 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC17.48■□□□□ 0.39
CCNA1P78396 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC17.48■□□□□ 0.39
CCNA1P78396 AL023803.2-201ENST00000620080 638 ntBASIC17.48■□□□□ 0.39
CCNA1P78396 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.48■□□□□ 0.39
CCNA1P78396 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.48■□□□□ 0.39
CCNA1P78396 NKILA-202ENST00000614771 2598 ntBASIC17.48■□□□□ 0.39
CCNA1P78396 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
CCNA1P78396 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.48■□□□□ 0.39
CCNA1P78396 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCNA1P78396 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCNA1P78396 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CCNA1P78396 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.47■□□□□ 0.39
CCNA1P78396 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.47■□□□□ 0.39
CCNA1P78396 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 SMS-201ENST00000379404 1174 ntTSL 3 BASIC17.47■□□□□ 0.39
CCNA1P78396 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 AL136309.1-201ENST00000403917 691 ntBASIC17.47■□□□□ 0.39
CCNA1P78396 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.47■□□□□ 0.39
CCNA1P78396 AL133466.1-201ENST00000447582 150 ntBASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms