Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 GAPDHP40-201ENST00000505218 1006 ntBASIC13.34□□□□□ -0.27
ABCA4P78363 MIR4722-201ENST00000578292 60 ntBASIC13.34□□□□□ -0.27
ABCA4P78363 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 AC092127.1-201ENST00000567093 3455 ntBASIC13.34□□□□□ -0.27
ABCA4P78363 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC13.34□□□□□ -0.27
ABCA4P78363 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 AC022188.1-201ENST00000620960 1664 ntBASIC13.34□□□□□ -0.27
ABCA4P78363 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC13.34□□□□□ -0.27
ABCA4P78363 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.34□□□□□ -0.27
ABCA4P78363 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
ABCA4P78363 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.34□□□□□ -0.27
ABCA4P78363 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.34□□□□□ -0.27
ABCA4P78363 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
ABCA4P78363 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ABCA4P78363 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.34□□□□□ -0.27
ABCA4P78363 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.34□□□□□ -0.27
ABCA4P78363 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
ABCA4P78363 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
ABCA4P78363 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
ABCA4P78363 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.27
ABCA4P78363 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
ABCA4P78363 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC13.33□□□□□ -0.28
ABCA4P78363 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.33□□□□□ -0.28
ABCA4P78363 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.33□□□□□ -0.28
ABCA4P78363 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.33□□□□□ -0.28
ABCA4P78363 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
ABCA4P78363 ADM-202ENST00000524948 584 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 AC097359.3-201ENST00000603982 1210 ntBASIC13.33□□□□□ -0.28
ABCA4P78363 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
ABCA4P78363 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.33□□□□□ -0.28
ABCA4P78363 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms