Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.13■□□□□ 0.01
HNF4AP41235 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.13■□□□□ 0.01
HNF4AP41235 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HNF4AP41235 FAM45BP-202ENST00000592932 1624 ntBASIC15.13■□□□□ 0.01
HNF4AP41235 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.13■□□□□ 0.01
HNF4AP41235 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.12■□□□□ 0.01
HNF4AP41235 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.12■□□□□ 0.01
HNF4AP41235 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.12■□□□□ 0.01
HNF4AP41235 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.12■□□□□ 0.01
HNF4AP41235 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.12■□□□□ 0.01
HNF4AP41235 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.12■□□□□ 0.01
HNF4AP41235 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.12■□□□□ 0.01
HNF4AP41235 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.12■□□□□ 0.01
HNF4AP41235 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.12■□□□□ 0.01
HNF4AP41235 AC010336.2-201ENST00000564226 506 ntBASIC15.12■□□□□ 0.01
HNF4AP41235 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.12■□□□□ 0.01
HNF4AP41235 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 AL109936.8-201ENST00000641772 604 ntBASIC15.12■□□□□ 0.01
HNF4AP41235 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.12■□□□□ 0.01
HNF4AP41235 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
HNF4AP41235 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HNF4AP41235 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
HNF4AP41235 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.12■□□□□ 0.01
HNF4AP41235 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HNF4AP41235 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.12■□□□□ 0.01
HNF4AP41235 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HNF4AP41235 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.11■□□□□ 0.01
HNF4AP41235 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
HNF4AP41235 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HNF4AP41235 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HNF4AP41235 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
HNF4AP41235 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 AC074338.1-201ENST00000416825 156 ntBASIC15.11■□□□□ 0.01
HNF4AP41235 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.11■□□□□ 0.01
HNF4AP41235 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.11■□□□□ 0.01
HNF4AP41235 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.11■□□□□ 0.01
HNF4AP41235 BASP1P1-201ENST00000430708 665 ntBASIC15.11■□□□□ 0.01
HNF4AP41235 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.11■□□□□ 0.01
HNF4AP41235 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
HNF4AP41235 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.11■□□□□ 0.01
HNF4AP41235 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 AC044860.1-202ENST00000559481 777 ntBASIC15.11■□□□□ 0.01
HNF4AP41235 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.11■□□□□ 0.01
HNF4AP41235 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.11■□□□□ 0.01
HNF4AP41235 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HNF4AP41235 AC087499.5-201ENST00000452760 1342 ntBASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms