Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
HOXC9P31274 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.83
HOXC9P31274 AP000593.2-201ENST00000542775 1433 ntBASIC20.27■□□□□ 0.83
HOXC9P31274 BANP-204ENST00000393208 2283 ntTSL 2 BASIC20.27■□□□□ 0.83
HOXC9P31274 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC20.27■□□□□ 0.83
HOXC9P31274 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
HOXC9P31274 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HOXC9P31274 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC20.26■□□□□ 0.83
HOXC9P31274 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
HOXC9P31274 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
HOXC9P31274 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 AC092506.1-202ENST00000401022 528 ntBASIC20.26■□□□□ 0.83
HOXC9P31274 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 GHSR-202ENST00000427970 912 ntBASIC20.26■□□□□ 0.83
HOXC9P31274 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC20.26■□□□□ 0.83
HOXC9P31274 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC20.26■□□□□ 0.83
HOXC9P31274 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC20.26■□□□□ 0.83
HOXC9P31274 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
HOXC9P31274 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXC9P31274 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC20.26■□□□□ 0.83
HOXC9P31274 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
HOXC9P31274 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
HOXC9P31274 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXC9P31274 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HOXC9P31274 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
HOXC9P31274 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 FKBP4P6-201ENST00000457486 1332 ntBASIC20.26■□□□□ 0.83
HOXC9P31274 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC9P31274 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
HOXC9P31274 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HOXC9P31274 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXC9P31274 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC20.25■□□□□ 0.83
HOXC9P31274 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC20.25■□□□□ 0.83
HOXC9P31274 AL358472.3-201ENST00000608147 415 ntBASIC20.25■□□□□ 0.83
HOXC9P31274 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC20.25■□□□□ 0.83
HOXC9P31274 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXC9P31274 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC20.25■□□□□ 0.83
HOXC9P31274 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXC9P31274 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXC9P31274 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HOXC9P31274 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC9P31274 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXC9P31274 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXC9P31274 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXC9P31274 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
HOXC9P31274 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 REXO1L4P-201ENST00000605109 1937 ntBASIC20.24■□□□□ 0.83
HOXC9P31274 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
HOXC9P31274 RN7SKP175-201ENST00000408472 289 ntBASIC20.24■□□□□ 0.83
HOXC9P31274 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC20.24■□□□□ 0.83
HOXC9P31274 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 AC022217.1-201ENST00000521069 738 ntBASIC20.24■□□□□ 0.83
HOXC9P31274 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXC9P31274 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC20.24■□□□□ 0.83
HOXC9P31274 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXC9P31274 AL645939.5-201ENST00000606834 243 ntBASIC20.24■□□□□ 0.83
HOXC9P31274 AC097724.1-201ENST00000609581 426 ntBASIC20.24■□□□□ 0.83
HOXC9P31274 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC20.24■□□□□ 0.83
HOXC9P31274 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
HOXC9P31274 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms