Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC19■□□□□ 0.63
COL5A3P25940 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19■□□□□ 0.63
COL5A3P25940 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
COL5A3P25940 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC19■□□□□ 0.63
COL5A3P25940 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC19■□□□□ 0.63
COL5A3P25940 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC19■□□□□ 0.63
COL5A3P25940 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19■□□□□ 0.63
COL5A3P25940 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC19■□□□□ 0.63
COL5A3P25940 PUDPP3-201ENST00000445368 636 ntBASIC19■□□□□ 0.63
COL5A3P25940 RN7SL258P-201ENST00000478664 300 ntBASIC19■□□□□ 0.63
COL5A3P25940 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC19■□□□□ 0.63
COL5A3P25940 SCARNA21-201ENST00000517026 139 ntBASIC19■□□□□ 0.63
COL5A3P25940 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC19■□□□□ 0.63
COL5A3P25940 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL5A3P25940 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC19■□□□□ 0.63
COL5A3P25940 HPN-206ENST00000597419 1212 ntTSL 5 BASIC19■□□□□ 0.63
COL5A3P25940 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC19■□□□□ 0.63
COL5A3P25940 MIR6756-201ENST00000616240 63 ntBASIC19■□□□□ 0.63
COL5A3P25940 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 AC136759.1-202ENST00000530858 2194 ntBASIC19■□□□□ 0.63
COL5A3P25940 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.99■□□□□ 0.63
COL5A3P25940 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
COL5A3P25940 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
COL5A3P25940 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.99■□□□□ 0.63
COL5A3P25940 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL5A3P25940 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.99■□□□□ 0.63
COL5A3P25940 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL5A3P25940 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC18.99■□□□□ 0.63
COL5A3P25940 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC18.99■□□□□ 0.63
COL5A3P25940 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC18.99■□□□□ 0.63
COL5A3P25940 RPL13AP19-201ENST00000434320 584 ntBASIC18.99■□□□□ 0.63
COL5A3P25940 GCOM2-201ENST00000509133 1104 ntBASIC18.99■□□□□ 0.63
COL5A3P25940 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC18.99■□□□□ 0.63
COL5A3P25940 FOS-204ENST00000554617 796 ntTSL 2 BASIC18.99■□□□□ 0.63
COL5A3P25940 RPS15-202ENST00000585665 467 ntTSL 3 BASIC18.99■□□□□ 0.63
COL5A3P25940 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC18.99■□□□□ 0.63
COL5A3P25940 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.99■□□□□ 0.63
COL5A3P25940 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
COL5A3P25940 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
COL5A3P25940 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
COL5A3P25940 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL5A3P25940 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
COL5A3P25940 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.99■□□□□ 0.63
COL5A3P25940 AL590440.2-201ENST00000641973 1595 ntBASIC18.99■□□□□ 0.63
COL5A3P25940 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.98■□□□□ 0.63
COL5A3P25940 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC18.98■□□□□ 0.63
COL5A3P25940 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
COL5A3P25940 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
COL5A3P25940 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 NCR3-202ENST00000376071 541 ntTSL 5 BASIC18.98■□□□□ 0.63
COL5A3P25940 OR2R1P-201ENST00000441404 914 ntBASIC18.98■□□□□ 0.63
COL5A3P25940 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC18.98■□□□□ 0.63
COL5A3P25940 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.98■□□□□ 0.63
COL5A3P25940 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.98■□□□□ 0.63
COL5A3P25940 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18.98■□□□□ 0.63
COL5A3P25940 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC18.98■□□□□ 0.63
COL5A3P25940 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC18.98■□□□□ 0.63
COL5A3P25940 AC008825.2-201ENST00000603374 718 ntBASIC18.98■□□□□ 0.63
COL5A3P25940 AP001065.2-201ENST00000617205 644 ntBASIC18.98■□□□□ 0.63
COL5A3P25940 AC005618.3-201ENST00000624928 458 ntBASIC18.98■□□□□ 0.63
COL5A3P25940 KRT8P31-201ENST00000504812 1408 ntBASIC18.98■□□□□ 0.63
COL5A3P25940 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC18.98■□□□□ 0.63
COL5A3P25940 FZD10-202ENST00000539839 3282 ntBASIC18.98■□□□□ 0.63
COL5A3P25940 AC023090.2-201ENST00000625182 2110 ntBASIC18.98■□□□□ 0.63
COL5A3P25940 FRMPD2B-201ENST00000431305 1347 ntBASIC18.98■□□□□ 0.63
COL5A3P25940 AC074138.1-201ENST00000611182 1303 ntBASIC18.98■□□□□ 0.63
COL5A3P25940 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A3P25940 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A3P25940 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms