Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
MSH3P20585 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.49■□□□□ 0.07
MSH3P20585 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
MSH3P20585 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.49■□□□□ 0.07
MSH3P20585 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
MSH3P20585 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.49■□□□□ 0.07
MSH3P20585 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.49■□□□□ 0.07
MSH3P20585 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
MSH3P20585 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
MSH3P20585 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.49■□□□□ 0.07
MSH3P20585 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 AL133267.1-201ENST00000398220 340 ntBASIC15.49■□□□□ 0.07
MSH3P20585 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.49■□□□□ 0.07
MSH3P20585 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.49■□□□□ 0.07
MSH3P20585 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.49■□□□□ 0.07
MSH3P20585 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.49■□□□□ 0.07
MSH3P20585 AC023310.3-201ENST00000557027 670 ntBASIC15.49■□□□□ 0.07
MSH3P20585 AC100756.1-201ENST00000562736 682 ntBASIC15.49■□□□□ 0.07
MSH3P20585 AC138749.3-201ENST00000567691 622 ntBASIC15.49■□□□□ 0.07
MSH3P20585 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.49■□□□□ 0.07
MSH3P20585 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
MSH3P20585 AC116165.1-201ENST00000611806 668 ntBASIC15.49■□□□□ 0.07
MSH3P20585 AC004790.1-201ENST00000612686 536 ntBASIC15.49■□□□□ 0.07
MSH3P20585 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 AC099063.4-201ENST00000641099 1602 ntBASIC15.49■□□□□ 0.07
MSH3P20585 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.49■□□□□ 0.07
MSH3P20585 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 AC136621.1-201ENST00000624017 2304 ntBASIC15.49■□□□□ 0.07
MSH3P20585 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSH3P20585 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 AL121723.1-201ENST00000445194 1519 ntBASIC15.48■□□□□ 0.07
MSH3P20585 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.48■□□□□ 0.07
MSH3P20585 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.48■□□□□ 0.07
MSH3P20585 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.48■□□□□ 0.07
MSH3P20585 AC007541.1-201ENST00000570282 1469 ntBASIC15.48■□□□□ 0.07
MSH3P20585 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
MSH3P20585 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
MSH3P20585 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
MSH3P20585 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.48■□□□□ 0.07
MSH3P20585 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.48■□□□□ 0.07
MSH3P20585 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.48■□□□□ 0.07
MSH3P20585 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.48■□□□□ 0.07
MSH3P20585 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.48■□□□□ 0.07
MSH3P20585 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.48■□□□□ 0.07
MSH3P20585 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.48■□□□□ 0.07
MSH3P20585 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
MSH3P20585 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.48■□□□□ 0.07
MSH3P20585 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.48■□□□□ 0.07
MSH3P20585 AC055876.2-201ENST00000531834 546 ntBASIC15.48■□□□□ 0.07
MSH3P20585 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.48■□□□□ 0.07
MSH3P20585 RARRES2P5-201ENST00000564013 466 ntBASIC15.48■□□□□ 0.07
MSH3P20585 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.48■□□□□ 0.07
MSH3P20585 AC036164.1-201ENST00000570544 333 ntBASIC15.48■□□□□ 0.07
MSH3P20585 AC015910.1-201ENST00000579400 975 ntBASIC15.48■□□□□ 0.07
MSH3P20585 AL132655.2-201ENST00000596276 594 ntBASIC15.48■□□□□ 0.07
MSH3P20585 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.48■□□□□ 0.07
MSH3P20585 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.48■□□□□ 0.07
MSH3P20585 AL158212.4-201ENST00000624062 1286 ntBASIC15.48■□□□□ 0.07
MSH3P20585 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
MSH3P20585 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
MSH3P20585 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSH3P20585 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.48■□□□□ 0.07
MSH3P20585 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
MSH3P20585 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.48■□□□□ 0.07
MSH3P20585 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms