Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.67■□□□□ 0.1
VCANP13611 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VCANP13611 AC008536.3-201ENST00000623282 1599 ntBASIC15.67■□□□□ 0.1
VCANP13611 CASP2-203ENST00000392925 616 ntTSL 3 BASIC15.67■□□□□ 0.1
VCANP13611 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.67■□□□□ 0.1
VCANP13611 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
VCANP13611 AL590235.1-201ENST00000564650 861 ntBASIC15.67■□□□□ 0.1
VCANP13611 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC15.66■□□□□ 0.1
VCANP13611 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.66■□□□□ 0.1
VCANP13611 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.66■□□□□ 0.1
VCANP13611 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
VCANP13611 PUDPP3-201ENST00000445368 636 ntBASIC15.66■□□□□ 0.1
VCANP13611 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC15.66■□□□□ 0.1
VCANP13611 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC15.66■□□□□ 0.1
VCANP13611 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.66■□□□□ 0.1
VCANP13611 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 KRT8P14-201ENST00000414254 1442 ntBASIC15.66■□□□□ 0.1
VCANP13611 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC15.66■□□□□ 0.1
VCANP13611 BAX-205ENST00000391871 687 ntTSL 5 BASIC15.66■□□□□ 0.1
VCANP13611 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC15.66■□□□□ 0.1
VCANP13611 VDAC1P1-201ENST00000439229 848 ntBASIC15.66■□□□□ 0.1
VCANP13611 AC092638.2-201ENST00000441105 947 ntBASIC15.66■□□□□ 0.1
VCANP13611 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 SRP14-204ENST00000558720 780 ntTSL 2 BASIC15.66■□□□□ 0.1
VCANP13611 AC120498.5-201ENST00000561757 299 ntBASIC15.66■□□□□ 0.1
VCANP13611 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
VCANP13611 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.66■□□□□ 0.1
VCANP13611 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 AC106886.4-201ENST00000623557 2502 ntBASIC15.66■□□□□ 0.1
VCANP13611 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC15.66■□□□□ 0.1
VCANP13611 AC026320.2-201ENST00000434379 478 ntBASIC15.66■□□□□ 0.1
VCANP13611 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC15.66■□□□□ 0.1
VCANP13611 AC106047.2-201ENST00000511723 743 ntBASIC15.66■□□□□ 0.1
VCANP13611 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.66■□□□□ 0.1
VCANP13611 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
VCANP13611 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC15.66■□□□□ 0.1
VCANP13611 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VCANP13611 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VCANP13611 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.65■□□□□ 0.1
VCANP13611 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC15.65■□□□□ 0.1
VCANP13611 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.65■□□□□ 0.1
VCANP13611 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 Z69890.1-201ENST00000382990 339 ntBASIC15.65■□□□□ 0.1
VCANP13611 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC15.65■□□□□ 0.1
VCANP13611 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC15.65■□□□□ 0.1
VCANP13611 AC245100.5-201ENST00000452108 331 ntBASIC15.65■□□□□ 0.1
VCANP13611 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC15.65■□□□□ 0.1
VCANP13611 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC15.65■□□□□ 0.1
VCANP13611 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 FLJ38576-201ENST00000623820 2459 ntBASIC15.65■□□□□ 0.1
VCANP13611 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.65■□□□□ 0.1
VCANP13611 REXO1L2P-201ENST00000425429 2069 ntBASIC15.65■□□□□ 0.1
VCANP13611 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
VCANP13611 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.65■□□□□ 0.1
VCANP13611 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VCANP13611 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.65■□□□□ 0.1
VCANP13611 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 AL109809.1-201ENST00000418979 1367 ntBASIC15.65■□□□□ 0.1
VCANP13611 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC15.65■□□□□ 0.1
VCANP13611 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC15.65■□□□□ 0.1
VCANP13611 RN7SL494P-201ENST00000461517 304 ntBASIC15.65■□□□□ 0.1
VCANP13611 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC15.65■□□□□ 0.1
VCANP13611 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
VCANP13611 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VCANP13611 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC15.65■□□□□ 0.1
VCANP13611 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.64■□□□□ 0.09
VCANP13611 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VCANP13611 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms