Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
APOEP02649 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 AC023824.1-201ENST00000562945 2975 ntBASIC16.32■□□□□ 0.2
APOEP02649 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.31■□□□□ 0.2
APOEP02649 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 TMBIM7P-203ENST00000641617 1718 ntBASIC16.31■□□□□ 0.2
APOEP02649 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.31■□□□□ 0.2
APOEP02649 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.31■□□□□ 0.2
APOEP02649 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
APOEP02649 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
APOEP02649 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.31■□□□□ 0.2
APOEP02649 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
APOEP02649 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.31■□□□□ 0.2
APOEP02649 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.31■□□□□ 0.2
APOEP02649 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.31■□□□□ 0.2
APOEP02649 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.31■□□□□ 0.2
APOEP02649 RARRES2P5-201ENST00000564013 466 ntBASIC16.31■□□□□ 0.2
APOEP02649 RRP7BP-205ENST00000566851 833 ntBASIC16.31■□□□□ 0.2
APOEP02649 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.31■□□□□ 0.2
APOEP02649 AC036164.1-201ENST00000570544 333 ntBASIC16.31■□□□□ 0.2
APOEP02649 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.31■□□□□ 0.2
APOEP02649 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
APOEP02649 AC027307.3-201ENST00000594262 1100 ntBASIC16.31■□□□□ 0.2
APOEP02649 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.31■□□□□ 0.2
APOEP02649 AL158212.4-201ENST00000624062 1286 ntBASIC16.31■□□□□ 0.2
APOEP02649 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.31■□□□□ 0.2
APOEP02649 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.31■□□□□ 0.2
APOEP02649 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.31■□□□□ 0.2
APOEP02649 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOEP02649 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
APOEP02649 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
APOEP02649 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
APOEP02649 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
APOEP02649 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
APOEP02649 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
APOEP02649 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
APOEP02649 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.3■□□□□ 0.2
APOEP02649 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.3■□□□□ 0.2
APOEP02649 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.3■□□□□ 0.2
APOEP02649 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.3■□□□□ 0.2
APOEP02649 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.3■□□□□ 0.2
APOEP02649 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 KRT18P43-201ENST00000469825 1281 ntBASIC16.3■□□□□ 0.2
APOEP02649 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.3■□□□□ 0.2
APOEP02649 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.3■□□□□ 0.2
APOEP02649 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.3■□□□□ 0.2
APOEP02649 AC140912.1-201ENST00000577171 1054 ntBASIC16.3■□□□□ 0.2
APOEP02649 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.3■□□□□ 0.2
APOEP02649 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.3■□□□□ 0.2
APOEP02649 AC099568.2-201ENST00000609194 695 ntBASIC16.3■□□□□ 0.2
APOEP02649 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.3■□□□□ 0.2
APOEP02649 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.3■□□□□ 0.2
APOEP02649 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 AC006058.4-201ENST00000624016 1670 ntBASIC16.3■□□□□ 0.2
APOEP02649 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.3■□□□□ 0.2
APOEP02649 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOEP02649 AC023157.3-201ENST00000619086 2088 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms