Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.96■■□□□ 1.11
SCN2AQ99250 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.96■■□□□ 1.11
SCN2AQ99250 MIR4787-201ENST00000607364 84 ntBASIC21.96■■□□□ 1.11
SCN2AQ99250 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.95■■□□□ 1.1
SCN2AQ99250 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN2AQ99250 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN2AQ99250 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN2AQ99250 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.95■■□□□ 1.1
SCN2AQ99250 AC137630.3-201ENST00000607245 391 ntBASIC21.95■■□□□ 1.1
SCN2AQ99250 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SCN2AQ99250 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN2AQ99250 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN2AQ99250 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SCN2AQ99250 AC135731.1-201ENST00000569415 2548 ntBASIC21.94■■□□□ 1.1
SCN2AQ99250 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SCN2AQ99250 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SCN2AQ99250 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.94■■□□□ 1.1
SCN2AQ99250 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.94■■□□□ 1.1
SCN2AQ99250 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.94■■□□□ 1.1
SCN2AQ99250 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
SCN2AQ99250 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.94■■□□□ 1.1
SCN2AQ99250 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
SCN2AQ99250 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN2AQ99250 AC131212.1-201ENST00000613771 668 ntBASIC21.93■■□□□ 1.1
SCN2AQ99250 AC090877.2-201ENST00000558441 1738 ntBASIC21.93■■□□□ 1.1
SCN2AQ99250 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SCN2AQ99250 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
SCN2AQ99250 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.92■■□□□ 1.1
SCN2AQ99250 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.92■■□□□ 1.1
SCN2AQ99250 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SCN2AQ99250 KRT125P-201ENST00000546827 989 ntBASIC21.92■■□□□ 1.1
SCN2AQ99250 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
SCN2AQ99250 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.92■■□□□ 1.1
SCN2AQ99250 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SCN2AQ99250 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.92■■□□□ 1.1
SCN2AQ99250 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
SCN2AQ99250 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.91■■□□□ 1.1
SCN2AQ99250 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.91■■□□□ 1.1
SCN2AQ99250 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SCN2AQ99250 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN2AQ99250 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SCN2AQ99250 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.91■■□□□ 1.1
SCN2AQ99250 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
SCN2AQ99250 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SCN2AQ99250 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.9■■□□□ 1.1
SCN2AQ99250 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SCN2AQ99250 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.9■■□□□ 1.1
SCN2AQ99250 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SCN2AQ99250 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.89■■□□□ 1.09
SCN2AQ99250 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.89■■□□□ 1.09
SCN2AQ99250 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.89■■□□□ 1.09
SCN2AQ99250 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.88■■□□□ 1.09
SCN2AQ99250 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SCN2AQ99250 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SCN2AQ99250 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SCN2AQ99250 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SCN2AQ99250 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SCN2AQ99250 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.88■■□□□ 1.09
SCN2AQ99250 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SCN2AQ99250 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.88■■□□□ 1.09
SCN2AQ99250 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.87■■□□□ 1.09
SCN2AQ99250 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SCN2AQ99250 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SCN2AQ99250 AP003733.4-201ENST00000623785 1697 ntBASIC21.87■■□□□ 1.09
SCN2AQ99250 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SCN2AQ99250 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.87■■□□□ 1.09
SCN2AQ99250 MIR6089-201ENST00000616698 64 ntBASIC21.87■■□□□ 1.09
SCN2AQ99250 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.87■■□□□ 1.09
SCN2AQ99250 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SCN2AQ99250 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SCN2AQ99250 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.86■■□□□ 1.09
SCN2AQ99250 SNX5-217ENST00000606557 1087 ntBASIC21.86■■□□□ 1.09
SCN2AQ99250 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.86■■□□□ 1.09
SCN2AQ99250 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SCN2AQ99250 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SCN2AQ99250 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
SCN2AQ99250 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SCN2AQ99250 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.85■■□□□ 1.09
SCN2AQ99250 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SCN2AQ99250 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
SCN2AQ99250 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SCN2AQ99250 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.85■■□□□ 1.09
SCN2AQ99250 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
SCN2AQ99250 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.85■■□□□ 1.09
SCN2AQ99250 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SCN2AQ99250 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SCN2AQ99250 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SCN2AQ99250 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SCN2AQ99250 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
SCN2AQ99250 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
SCN2AQ99250 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.84■■□□□ 1.09
SCN2AQ99250 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.84■■□□□ 1.09
SCN2AQ99250 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.84■■□□□ 1.09
SCN2AQ99250 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.84■■□□□ 1.09
SCN2AQ99250 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SCN2AQ99250 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SCN2AQ99250 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SCN2AQ99250 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SCN2AQ99250 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.84■■□□□ 1.09
SCN2AQ99250 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms