Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.34■■□□□ 1.33
VPS13AQ96RL7 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.34■■□□□ 1.33
VPS13AQ96RL7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
VPS13AQ96RL7 FOXO3B-201ENST00000395675 1928 ntBASIC23.33■■□□□ 1.33
VPS13AQ96RL7 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
VPS13AQ96RL7 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.33■■□□□ 1.33
VPS13AQ96RL7 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC23.33■■□□□ 1.33
VPS13AQ96RL7 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
VPS13AQ96RL7 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS13AQ96RL7 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS13AQ96RL7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
VPS13AQ96RL7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS13AQ96RL7 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
VPS13AQ96RL7 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
VPS13AQ96RL7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.32■■□□□ 1.32
VPS13AQ96RL7 DRD5P2-201ENST00000421395 2012 ntBASIC23.31■■□□□ 1.32
VPS13AQ96RL7 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
VPS13AQ96RL7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS13AQ96RL7 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS13AQ96RL7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.3■■□□□ 1.32
VPS13AQ96RL7 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.3■■□□□ 1.32
VPS13AQ96RL7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.3■■□□□ 1.32
VPS13AQ96RL7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.3■■□□□ 1.32
VPS13AQ96RL7 AC099791.1-201ENST00000416440 715 ntBASIC23.3■■□□□ 1.32
VPS13AQ96RL7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS13AQ96RL7 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC23.3■■□□□ 1.32
VPS13AQ96RL7 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
VPS13AQ96RL7 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
VPS13AQ96RL7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
VPS13AQ96RL7 DUX4L2-201ENST00000561772 1275 ntBASIC23.29■■□□□ 1.32
VPS13AQ96RL7 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.29■■□□□ 1.32
VPS13AQ96RL7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.29■■□□□ 1.32
VPS13AQ96RL7 DUX4L6-201ENST00000626483 1275 ntBASIC23.29■■□□□ 1.32
VPS13AQ96RL7 DUX4L1-201ENST00000627662 1275 ntBASIC23.29■■□□□ 1.32
VPS13AQ96RL7 DUX4L8-201ENST00000629013 1275 ntBASIC23.29■■□□□ 1.32
VPS13AQ96RL7 DUX4L3-201ENST00000630187 1275 ntBASIC23.29■■□□□ 1.32
VPS13AQ96RL7 DUX4L7-201ENST00000630678 1275 ntBASIC23.29■■□□□ 1.32
VPS13AQ96RL7 DUX4L5-201ENST00000630834 1275 ntBASIC23.29■■□□□ 1.32
VPS13AQ96RL7 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
VPS13AQ96RL7 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.29■■□□□ 1.32
VPS13AQ96RL7 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
VPS13AQ96RL7 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
VPS13AQ96RL7 SERBP1P1-201ENST00000396021 1160 ntBASIC23.29■■□□□ 1.32
VPS13AQ96RL7 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
VPS13AQ96RL7 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.28■■□□□ 1.32
VPS13AQ96RL7 AC066615.1-201ENST00000640911 628 ntBASIC23.28■■□□□ 1.32
VPS13AQ96RL7 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
VPS13AQ96RL7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
VPS13AQ96RL7 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
VPS13AQ96RL7 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.28■■□□□ 1.32
VPS13AQ96RL7 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
VPS13AQ96RL7 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
VPS13AQ96RL7 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
VPS13AQ96RL7 AC008764.7-201ENST00000593779 1081 ntBASIC23.28■■□□□ 1.32
VPS13AQ96RL7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
VPS13AQ96RL7 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
VPS13AQ96RL7 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
VPS13AQ96RL7 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.26■■□□□ 1.31
VPS13AQ96RL7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.26■■□□□ 1.31
VPS13AQ96RL7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.26■■□□□ 1.31
VPS13AQ96RL7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS13AQ96RL7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
VPS13AQ96RL7 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.26■■□□□ 1.31
VPS13AQ96RL7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.26■■□□□ 1.31
VPS13AQ96RL7 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
VPS13AQ96RL7 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.25■■□□□ 1.31
VPS13AQ96RL7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
VPS13AQ96RL7 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
VPS13AQ96RL7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.25■■□□□ 1.31
VPS13AQ96RL7 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
VPS13AQ96RL7 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS13AQ96RL7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS13AQ96RL7 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS13AQ96RL7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS13AQ96RL7 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS13AQ96RL7 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.24■■□□□ 1.31
VPS13AQ96RL7 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS13AQ96RL7 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
VPS13AQ96RL7 AC004448.1-201ENST00000458332 883 ntBASIC23.24■■□□□ 1.31
VPS13AQ96RL7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.23■■□□□ 1.31
VPS13AQ96RL7 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
VPS13AQ96RL7 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC23.22■■□□□ 1.31
VPS13AQ96RL7 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.22■■□□□ 1.31
VPS13AQ96RL7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
VPS13AQ96RL7 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC23.22■■□□□ 1.31
VPS13AQ96RL7 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.22■■□□□ 1.31
VPS13AQ96RL7 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.21■■□□□ 1.31
VPS13AQ96RL7 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.21■■□□□ 1.31
VPS13AQ96RL7 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VPS13AQ96RL7 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms