Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
LRRK1Q38SD2 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LRRK1Q38SD2 AC020928.2-201ENST00000588717 2197 ntBASIC23.16■■□□□ 1.3
LRRK1Q38SD2 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LRRK1Q38SD2 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LRRK1Q38SD2 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.16■■□□□ 1.3
LRRK1Q38SD2 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.16■■□□□ 1.3
LRRK1Q38SD2 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.16■■□□□ 1.3
LRRK1Q38SD2 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
LRRK1Q38SD2 MTDHP2-201ENST00000601468 714 ntBASIC23.16■■□□□ 1.3
LRRK1Q38SD2 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.16■■□□□ 1.3
LRRK1Q38SD2 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.16■■□□□ 1.3
LRRK1Q38SD2 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 AC022211.4-201ENST00000625094 2161 ntBASIC23.15■■□□□ 1.3
LRRK1Q38SD2 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 TSPY9P-201ENST00000440215 945 ntBASIC23.15■■□□□ 1.3
LRRK1Q38SD2 TSPY11P-201ENST00000442607 1045 ntBASIC23.15■■□□□ 1.3
LRRK1Q38SD2 MIR6724-1-201ENST00000616420 92 ntBASIC23.15■■□□□ 1.3
LRRK1Q38SD2 MIR6724-2-201ENST00000616483 92 ntBASIC23.15■■□□□ 1.3
LRRK1Q38SD2 MIR6724-4-201ENST00000617390 92 ntBASIC23.15■■□□□ 1.3
LRRK1Q38SD2 MIR6724-3-201ENST00000622482 92 ntBASIC23.15■■□□□ 1.3
LRRK1Q38SD2 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
LRRK1Q38SD2 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
LRRK1Q38SD2 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.14■■□□□ 1.3
LRRK1Q38SD2 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
LRRK1Q38SD2 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
LRRK1Q38SD2 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
LRRK1Q38SD2 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.14■■□□□ 1.29
LRRK1Q38SD2 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.14■■□□□ 1.29
LRRK1Q38SD2 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRRK1Q38SD2 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
LRRK1Q38SD2 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LRRK1Q38SD2 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
LRRK1Q38SD2 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
LRRK1Q38SD2 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.13■■□□□ 1.29
LRRK1Q38SD2 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LRRK1Q38SD2 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.13■■□□□ 1.29
LRRK1Q38SD2 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.13■■□□□ 1.29
LRRK1Q38SD2 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LRRK1Q38SD2 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.13■■□□□ 1.29
LRRK1Q38SD2 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRRK1Q38SD2 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
LRRK1Q38SD2 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRRK1Q38SD2 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRRK1Q38SD2 MTURN-203ENST00000409688 843 ntTSL 2 BASIC23.12■■□□□ 1.29
LRRK1Q38SD2 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRRK1Q38SD2 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.12■■□□□ 1.29
LRRK1Q38SD2 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.12■■□□□ 1.29
LRRK1Q38SD2 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRRK1Q38SD2 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
LRRK1Q38SD2 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.11■■□□□ 1.29
LRRK1Q38SD2 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRRK1Q38SD2 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.09■■□□□ 1.29
LRRK1Q38SD2 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
LRRK1Q38SD2 AC010997.5-201ENST00000609182 354 ntBASIC23.09■■□□□ 1.29
LRRK1Q38SD2 AL117332.1-201ENST00000622628 974 ntBASIC23.09■■□□□ 1.29
LRRK1Q38SD2 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
LRRK1Q38SD2 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
LRRK1Q38SD2 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
LRRK1Q38SD2 AL512631.2-201ENST00000604634 923 ntBASIC23.09■■□□□ 1.29
LRRK1Q38SD2 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.09■■□□□ 1.29
LRRK1Q38SD2 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
LRRK1Q38SD2 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.09■■□□□ 1.29
LRRK1Q38SD2 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LRRK1Q38SD2 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.08■■□□□ 1.29
LRRK1Q38SD2 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LRRK1Q38SD2 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
LRRK1Q38SD2 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
LRRK1Q38SD2 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
LRRK1Q38SD2 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.08■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms