Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.39■□□□□ 0.85
COL8A1P27658 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
COL8A1P27658 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
COL8A1P27658 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL8A1P27658 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL8A1P27658 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL8A1P27658 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL8A1P27658 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL8A1P27658 ESRRAP2-201ENST00000418437 1549 ntBASIC20.38■□□□□ 0.85
COL8A1P27658 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
COL8A1P27658 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
COL8A1P27658 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL8A1P27658 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.37■□□□□ 0.85
COL8A1P27658 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL8A1P27658 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL8A1P27658 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL8A1P27658 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.37■□□□□ 0.85
COL8A1P27658 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL8A1P27658 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
COL8A1P27658 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL8A1P27658 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL8A1P27658 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL8A1P27658 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.36■□□□□ 0.85
COL8A1P27658 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
COL8A1P27658 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.36■□□□□ 0.85
COL8A1P27658 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL8A1P27658 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL8A1P27658 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
COL8A1P27658 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL8A1P27658 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.35■□□□□ 0.85
COL8A1P27658 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.35■□□□□ 0.85
COL8A1P27658 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.35■□□□□ 0.85
COL8A1P27658 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL8A1P27658 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL8A1P27658 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.35■□□□□ 0.85
COL8A1P27658 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.35■□□□□ 0.85
COL8A1P27658 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.35■□□□□ 0.85
COL8A1P27658 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.35■□□□□ 0.85
COL8A1P27658 AL031602.1-201ENST00000633169 911 ntBASIC20.35■□□□□ 0.85
COL8A1P27658 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL8A1P27658 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL8A1P27658 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL8A1P27658 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
COL8A1P27658 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.34■□□□□ 0.85
COL8A1P27658 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.34■□□□□ 0.85
COL8A1P27658 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
COL8A1P27658 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.34■□□□□ 0.85
COL8A1P27658 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL8A1P27658 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
COL8A1P27658 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.33■□□□□ 0.85
COL8A1P27658 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.33■□□□□ 0.85
COL8A1P27658 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL8A1P27658 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
COL8A1P27658 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL8A1P27658 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL8A1P27658 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.32■□□□□ 0.84
COL8A1P27658 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL8A1P27658 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL8A1P27658 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL8A1P27658 HLA-L-209ENST00000420110 1011 ntBASIC20.31■□□□□ 0.84
COL8A1P27658 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.31■□□□□ 0.84
COL8A1P27658 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
COL8A1P27658 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.31■□□□□ 0.84
COL8A1P27658 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL8A1P27658 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL8A1P27658 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL8A1P27658 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
COL8A1P27658 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COL8A1P27658 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL8A1P27658 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
COL8A1P27658 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.3■□□□□ 0.84
COL8A1P27658 AC099791.2-201ENST00000605725 427 ntBASIC20.3■□□□□ 0.84
COL8A1P27658 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.3■□□□□ 0.84
COL8A1P27658 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL8A1P27658 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.29■□□□□ 0.84
COL8A1P27658 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
COL8A1P27658 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL8A1P27658 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL8A1P27658 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL8A1P27658 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL8A1P27658 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.29■□□□□ 0.84
COL8A1P27658 AC092171.4-201ENST00000609130 632 ntBASIC20.29■□□□□ 0.84
COL8A1P27658 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.29■□□□□ 0.84
COL8A1P27658 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.29■□□□□ 0.84
COL8A1P27658 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL8A1P27658 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL8A1P27658 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.28■□□□□ 0.84
COL8A1P27658 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.28■□□□□ 0.84
COL8A1P27658 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
COL8A1P27658 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
COL8A1P27658 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL8A1P27658 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.28■□□□□ 0.84
COL8A1P27658 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL8A1P27658 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL8A1P27658 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL8A1P27658 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.28■□□□□ 0.84
COL8A1P27658 DUX4L2-201ENST00000561772 1275 ntBASIC20.28■□□□□ 0.84
COL8A1P27658 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.28■□□□□ 0.84
COL8A1P27658 DUX4L6-201ENST00000626483 1275 ntBASIC20.28■□□□□ 0.84
COL8A1P27658 DUX4L1-201ENST00000627662 1275 ntBASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms