Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPTA1P02549 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPTA1P02549 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.24■□□□□ 0.99
SPTA1P02549 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.24■□□□□ 0.99
SPTA1P02549 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SPTA1P02549 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPTA1P02549 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPTA1P02549 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.24■□□□□ 0.99
SPTA1P02549 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.24■□□□□ 0.99
SPTA1P02549 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPTA1P02549 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.23■□□□□ 0.99
SPTA1P02549 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPTA1P02549 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.23■□□□□ 0.99
SPTA1P02549 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.23■□□□□ 0.99
SPTA1P02549 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.23■□□□□ 0.99
SPTA1P02549 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SPTA1P02549 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.23■□□□□ 0.99
SPTA1P02549 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SPTA1P02549 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
SPTA1P02549 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPTA1P02549 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPTA1P02549 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPTA1P02549 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPTA1P02549 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.21■□□□□ 0.99
SPTA1P02549 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.21■□□□□ 0.99
SPTA1P02549 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SPTA1P02549 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SPTA1P02549 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.21■□□□□ 0.99
SPTA1P02549 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.21■□□□□ 0.99
SPTA1P02549 AC066615.1-201ENST00000640911 628 ntBASIC21.21■□□□□ 0.99
SPTA1P02549 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SPTA1P02549 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.2■□□□□ 0.99
SPTA1P02549 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.99
SPTA1P02549 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
SPTA1P02549 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.2■□□□□ 0.99
SPTA1P02549 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SPTA1P02549 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SPTA1P02549 SLC47A1P1-202ENST00000449666 945 ntBASIC21.2■□□□□ 0.98
SPTA1P02549 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SPTA1P02549 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.2■□□□□ 0.98
SPTA1P02549 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SPTA1P02549 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SPTA1P02549 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SPTA1P02549 ABHD17AP1-201ENST00000358206 933 ntBASIC21.19■□□□□ 0.98
SPTA1P02549 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SPTA1P02549 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.19■□□□□ 0.98
SPTA1P02549 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.19■□□□□ 0.98
SPTA1P02549 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SPTA1P02549 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SPTA1P02549 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SPTA1P02549 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
SPTA1P02549 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SPTA1P02549 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.19■□□□□ 0.98
SPTA1P02549 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.19■□□□□ 0.98
SPTA1P02549 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SPTA1P02549 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SPTA1P02549 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.18■□□□□ 0.98
SPTA1P02549 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.18■□□□□ 0.98
SPTA1P02549 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SPTA1P02549 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.18■□□□□ 0.98
SPTA1P02549 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.18■□□□□ 0.98
SPTA1P02549 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.18■□□□□ 0.98
SPTA1P02549 FOXO3B-201ENST00000395675 1928 ntBASIC21.18■□□□□ 0.98
SPTA1P02549 AC090877.2-201ENST00000558441 1738 ntBASIC21.18■□□□□ 0.98
SPTA1P02549 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.18■□□□□ 0.98
SPTA1P02549 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
SPTA1P02549 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SPTA1P02549 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SPTA1P02549 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.17■□□□□ 0.98
SPTA1P02549 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.17■□□□□ 0.98
SPTA1P02549 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SPTA1P02549 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SPTA1P02549 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.16■□□□□ 0.98
SPTA1P02549 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SPTA1P02549 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SPTA1P02549 AC004448.1-201ENST00000458332 883 ntBASIC21.16■□□□□ 0.98
SPTA1P02549 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.15■□□□□ 0.98
SPTA1P02549 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SPTA1P02549 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.15■□□□□ 0.98
SPTA1P02549 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SPTA1P02549 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.15■□□□□ 0.98
SPTA1P02549 DUX4L2-201ENST00000561772 1275 ntBASIC21.15■□□□□ 0.98
SPTA1P02549 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.15■□□□□ 0.98
SPTA1P02549 DUX4L6-201ENST00000626483 1275 ntBASIC21.15■□□□□ 0.98
SPTA1P02549 DUX4L1-201ENST00000627662 1275 ntBASIC21.15■□□□□ 0.98
SPTA1P02549 DUX4L8-201ENST00000629013 1275 ntBASIC21.15■□□□□ 0.98
SPTA1P02549 DUX4L3-201ENST00000630187 1275 ntBASIC21.15■□□□□ 0.98
SPTA1P02549 DUX4L7-201ENST00000630678 1275 ntBASIC21.15■□□□□ 0.98
SPTA1P02549 DUX4L5-201ENST00000630834 1275 ntBASIC21.15■□□□□ 0.98
SPTA1P02549 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SPTA1P02549 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.14■□□□□ 0.98
SPTA1P02549 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SPTA1P02549 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
SPTA1P02549 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
SPTA1P02549 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
SPTA1P02549 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SPTA1P02549 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.14■□□□□ 0.97
SPTA1P02549 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SPTA1P02549 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SPTA1P02549 YBX1P1-201ENST00000445822 960 ntBASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms