Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSX4O60224 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SSX4O60224 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
SSX4O60224 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SSX4O60224 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SSX4O60224 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSX4O60224 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSX4O60224 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSX4O60224 AC139795.1-202ENST00000500444 432 ntBASIC20.85■□□□□ 0.93
SSX4O60224 AC010980.1-201ENST00000587192 1142 ntBASIC20.85■□□□□ 0.93
SSX4O60224 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSX4O60224 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSX4O60224 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SSX4O60224 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSX4O60224 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SSX4O60224 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SSX4O60224 AC096887.2-201ENST00000623443 1957 ntBASIC20.85■□□□□ 0.93
SSX4O60224 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.84■□□□□ 0.93
SSX4O60224 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 SPCS2P3-201ENST00000500401 656 ntBASIC20.84■□□□□ 0.93
SSX4O60224 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.84■□□□□ 0.93
SSX4O60224 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.84■□□□□ 0.93
SSX4O60224 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.84■□□□□ 0.93
SSX4O60224 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX4O60224 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SSX4O60224 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SSX4O60224 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSX4O60224 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
SSX4O60224 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSX4O60224 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSX4O60224 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSX4O60224 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.83■□□□□ 0.93
SSX4O60224 MIR6765-201ENST00000614092 87 ntBASIC20.83■□□□□ 0.93
SSX4O60224 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SSX4O60224 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSX4O60224 KRT8P33-201ENST00000508125 1423 ntBASIC20.83■□□□□ 0.93
SSX4O60224 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SSX4O60224 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SSX4O60224 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.83■□□□□ 0.92
SSX4O60224 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SSX4O60224 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SSX4O60224 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SSX4O60224 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SSX4O60224 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.83■□□□□ 0.92
SSX4O60224 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.82■□□□□ 0.92
SSX4O60224 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SSX4O60224 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SSX4O60224 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SSX4O60224 AC018755.3-202ENST00000596210 929 ntBASIC20.82■□□□□ 0.92
SSX4O60224 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.82■□□□□ 0.92
SSX4O60224 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SSX4O60224 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.82■□□□□ 0.92
SSX4O60224 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SSX4O60224 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SSX4O60224 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.81■□□□□ 0.92
SSX4O60224 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.81■□□□□ 0.92
SSX4O60224 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SSX4O60224 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SSX4O60224 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SSX4O60224 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SSX4O60224 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.81■□□□□ 0.92
SSX4O60224 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SSX4O60224 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.81■□□□□ 0.92
SSX4O60224 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SSX4O60224 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.81■□□□□ 0.92
SSX4O60224 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.81■□□□□ 0.92
SSX4O60224 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SSX4O60224 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SSX4O60224 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
SSX4O60224 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SSX4O60224 AL024507.2-201ENST00000606070 2574 ntBASIC20.81■□□□□ 0.92
SSX4O60224 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SSX4O60224 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SSX4O60224 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SSX4O60224 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
SSX4O60224 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SSX4O60224 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.8■□□□□ 0.92
SSX4O60224 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SSX4O60224 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SSX4O60224 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.8■□□□□ 0.92
SSX4O60224 AL451085.2-201ENST00000605085 799 ntBASIC20.8■□□□□ 0.92
SSX4O60224 AC074183.2-201ENST00000623112 922 ntBASIC20.8■□□□□ 0.92
SSX4O60224 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.8■□□□□ 0.92
SSX4O60224 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
SSX4O60224 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.79■□□□□ 0.92
SSX4O60224 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SSX4O60224 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.79■□□□□ 0.92
SSX4O60224 AL359504.2-201ENST00000605506 1601 ntBASIC20.79■□□□□ 0.92
SSX4O60224 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms