Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A5A8TX70 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A5A8TX70 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.47■□□□□ 0.55
COL6A5A8TX70 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A5A8TX70 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
COL6A5A8TX70 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.46■□□□□ 0.55
COL6A5A8TX70 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.46■□□□□ 0.55
COL6A5A8TX70 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.46■□□□□ 0.55
COL6A5A8TX70 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL6A5A8TX70 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.46■□□□□ 0.55
COL6A5A8TX70 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL6A5A8TX70 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL6A5A8TX70 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL6A5A8TX70 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.45■□□□□ 0.54
COL6A5A8TX70 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A5A8TX70 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
COL6A5A8TX70 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A5A8TX70 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A5A8TX70 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.44■□□□□ 0.54
COL6A5A8TX70 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A5A8TX70 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A5A8TX70 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.44■□□□□ 0.54
COL6A5A8TX70 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A5A8TX70 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A5A8TX70 TSPY20P-201ENST00000450910 630 ntBASIC18.43■□□□□ 0.54
COL6A5A8TX70 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.43■□□□□ 0.54
COL6A5A8TX70 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.43■□□□□ 0.54
COL6A5A8TX70 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.43■□□□□ 0.54
COL6A5A8TX70 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.43■□□□□ 0.54
COL6A5A8TX70 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.43■□□□□ 0.54
COL6A5A8TX70 AL358852.1-201ENST00000623174 1268 ntBASIC18.42■□□□□ 0.54
COL6A5A8TX70 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A5A8TX70 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A5A8TX70 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A5A8TX70 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A5A8TX70 AC027612.3-201ENST00000413684 1047 ntBASIC18.42■□□□□ 0.54
COL6A5A8TX70 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.42■□□□□ 0.54
COL6A5A8TX70 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.42■□□□□ 0.54
COL6A5A8TX70 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC18.42■□□□□ 0.54
COL6A5A8TX70 AC005703.6-201ENST00000623265 1329 ntBASIC18.42■□□□□ 0.54
COL6A5A8TX70 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A5A8TX70 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.41■□□□□ 0.54
COL6A5A8TX70 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A5A8TX70 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A5A8TX70 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.41■□□□□ 0.54
COL6A5A8TX70 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A5A8TX70 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A5A8TX70 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC18.41■□□□□ 0.54
COL6A5A8TX70 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL6A5A8TX70 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A5A8TX70 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.4■□□□□ 0.54
COL6A5A8TX70 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A5A8TX70 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.4■□□□□ 0.54
COL6A5A8TX70 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A5A8TX70 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A5A8TX70 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A5A8TX70 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A5A8TX70 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A5A8TX70 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A5A8TX70 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A5A8TX70 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.39■□□□□ 0.54
COL6A5A8TX70 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.39■□□□□ 0.54
COL6A5A8TX70 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.39■□□□□ 0.54
COL6A5A8TX70 AC080038.1-201ENST00000611274 1154 ntBASIC18.39■□□□□ 0.54
COL6A5A8TX70 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A5A8TX70 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A5A8TX70 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A5A8TX70 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A5A8TX70 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A5A8TX70 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A5A8TX70 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A5A8TX70 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A5A8TX70 AC136469.2-201ENST00000623944 1028 ntBASIC18.39■□□□□ 0.53
COL6A5A8TX70 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
COL6A5A8TX70 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A5A8TX70 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A5A8TX70 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A5A8TX70 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
COL6A5A8TX70 CDCA4P2-201ENST00000441182 718 ntBASIC18.38■□□□□ 0.53
COL6A5A8TX70 TERF1P2-201ENST00000583350 1212 ntBASIC18.38■□□□□ 0.53
COL6A5A8TX70 NTF6G-201ENST00000591094 616 ntBASIC18.38■□□□□ 0.53
COL6A5A8TX70 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.38■□□□□ 0.53
COL6A5A8TX70 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A5A8TX70 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A5A8TX70 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.38■□□□□ 0.53
COL6A5A8TX70 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.37■□□□□ 0.53
COL6A5A8TX70 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.37■□□□□ 0.53
COL6A5A8TX70 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A5A8TX70 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A5A8TX70 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A5A8TX70 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A5A8TX70 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A5A8TX70 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A5A8TX70 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A5A8TX70 AC026185.1-201ENST00000445748 174 ntBASIC18.36■□□□□ 0.53
COL6A5A8TX70 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.36■□□□□ 0.53
COL6A5A8TX70 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.36■□□□□ 0.53
COL6A5A8TX70 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.36■□□□□ 0.53
COL6A5A8TX70 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
COL6A5A8TX70 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms