Protein–RNA interactions for Protein: A0A140T963

RNF103-CHMP3, RNF103-CHMP3 readthrough (Fragment), humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF103-CHMP3A0A140T963 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.21■■□□□ 1.15
RNF103-CHMP3A0A140T963 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF103-CHMP3A0A140T963 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF103-CHMP3A0A140T963 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF103-CHMP3A0A140T963 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF103-CHMP3A0A140T963 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
RNF103-CHMP3A0A140T963 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
RNF103-CHMP3A0A140T963 DUSP8P5-201ENST00000422884 1815 ntBASIC22.2■■□□□ 1.14
RNF103-CHMP3A0A140T963 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RNF103-CHMP3A0A140T963 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RNF103-CHMP3A0A140T963 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.2■■□□□ 1.14
RNF103-CHMP3A0A140T963 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RNF103-CHMP3A0A140T963 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF103-CHMP3A0A140T963 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
RNF103-CHMP3A0A140T963 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RNF103-CHMP3A0A140T963 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RNF103-CHMP3A0A140T963 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF103-CHMP3A0A140T963 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.19■■□□□ 1.14
RNF103-CHMP3A0A140T963 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF103-CHMP3A0A140T963 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
RNF103-CHMP3A0A140T963 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF103-CHMP3A0A140T963 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
RNF103-CHMP3A0A140T963 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
RNF103-CHMP3A0A140T963 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF103-CHMP3A0A140T963 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RNF103-CHMP3A0A140T963 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.18■■□□□ 1.14
RNF103-CHMP3A0A140T963 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF103-CHMP3A0A140T963 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF103-CHMP3A0A140T963 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF103-CHMP3A0A140T963 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RNF103-CHMP3A0A140T963 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF103-CHMP3A0A140T963 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF103-CHMP3A0A140T963 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF103-CHMP3A0A140T963 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.17■■□□□ 1.14
RNF103-CHMP3A0A140T963 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF103-CHMP3A0A140T963 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF103-CHMP3A0A140T963 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
RNF103-CHMP3A0A140T963 ABHD17AP3-201ENST00000503096 1137 ntBASIC22.17■■□□□ 1.14
RNF103-CHMP3A0A140T963 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF103-CHMP3A0A140T963 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF103-CHMP3A0A140T963 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF103-CHMP3A0A140T963 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF103-CHMP3A0A140T963 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.16■■□□□ 1.14
RNF103-CHMP3A0A140T963 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.16■■□□□ 1.14
RNF103-CHMP3A0A140T963 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.16■■□□□ 1.14
RNF103-CHMP3A0A140T963 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF103-CHMP3A0A140T963 AC141586.4-201ENST00000624558 1573 ntBASIC22.16■■□□□ 1.14
RNF103-CHMP3A0A140T963 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF103-CHMP3A0A140T963 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF103-CHMP3A0A140T963 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF103-CHMP3A0A140T963 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
RNF103-CHMP3A0A140T963 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
RNF103-CHMP3A0A140T963 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
RNF103-CHMP3A0A140T963 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC22.14■■□□□ 1.13
RNF103-CHMP3A0A140T963 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
RNF103-CHMP3A0A140T963 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.14■■□□□ 1.13
RNF103-CHMP3A0A140T963 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC22.14■■□□□ 1.13
RNF103-CHMP3A0A140T963 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC22.14■■□□□ 1.13
RNF103-CHMP3A0A140T963 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
RNF103-CHMP3A0A140T963 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.14■■□□□ 1.13
RNF103-CHMP3A0A140T963 AC009831.1-201ENST00000580420 1582 ntBASIC22.13■■□□□ 1.13
RNF103-CHMP3A0A140T963 RNF126P1-201ENST00000567452 1320 ntBASIC22.13■■□□□ 1.13
RNF103-CHMP3A0A140T963 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF103-CHMP3A0A140T963 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
RNF103-CHMP3A0A140T963 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF103-CHMP3A0A140T963 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
RNF103-CHMP3A0A140T963 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
RNF103-CHMP3A0A140T963 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
RNF103-CHMP3A0A140T963 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
RNF103-CHMP3A0A140T963 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
RNF103-CHMP3A0A140T963 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
RNF103-CHMP3A0A140T963 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
RNF103-CHMP3A0A140T963 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
RNF103-CHMP3A0A140T963 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC22.11■■□□□ 1.13
RNF103-CHMP3A0A140T963 KRT18P10-201ENST00000388836 1287 ntBASIC22.11■■□□□ 1.13
RNF103-CHMP3A0A140T963 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
RNF103-CHMP3A0A140T963 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
RNF103-CHMP3A0A140T963 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 MIR6089-201ENST00000616698 64 ntBASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 AC133552.2-201ENST00000619106 1032 ntBASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RNF103-CHMP3A0A140T963 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms